Variant report

Variant	rs10741490
Chromosome Location	chr11:94282014-94282015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94279412..94282281-chr11:94323849..94325734,2	K562	blood:
2	chr11:94281593..94285373-chr11:94288859..94293120,4	K562	blood:
3	chr11:94275296..94279180-chr11:94281967..94284010,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10831239	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020851	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1257380	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs591584	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6483346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6483348	0.81[ASN][1000 genomes]
rs7926082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7926234	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7927312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7929056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7946385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946916	0.91[EUR][1000 genomes]
rs7950626	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9919636	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276800-94282600	Active TSS	Fetal Intestine Large	intestine
2	chr11:94277000-94283400	Active TSS	GM12878-XiMat	blood
3	chr11:94278400-94283400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:94278600-94282400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr11:94278600-94282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:94279200-94282800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr11:94279200-94296000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:94279400-94282200	Active TSS	Fetal Intestine Small	intestine
9	chr11:94279400-94282400	Weak transcription	Small Intestine	intestine
10	chr11:94279400-94282600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:94279400-94287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:94279600-94284800	Weak transcription	Placenta	Placenta
13	chr11:94279600-94285800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:94279600-94287200	Weak transcription	Ovary	ovary
15	chr11:94279600-94290200	Weak transcription	HSMM	muscle
16	chr11:94280200-94282200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:94280200-94282400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:94280200-94283400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:94280400-94283200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:94280400-94283200	Weak transcription	Thymus	Thymus
21	chr11:94280400-94283400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:94280400-94283400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:94280400-94283600	Weak transcription	Lung	lung
24	chr11:94280400-94285400	Weak transcription	Left Ventricle	heart
25	chr11:94280400-94286600	Weak transcription	Esophagus	oesophagus
26	chr11:94280400-94287200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94280400-94287200	Weak transcription	Gastric	stomach
28	chr11:94280400-94291200	Weak transcription	NHLF	lung
29	chr11:94280600-94282200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:94280600-94282600	Enhancers	Fetal Brain Male	brain
31	chr11:94280600-94283200	Weak transcription	Brain Angular Gyrus	brain
32	chr11:94280600-94287200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:94280600-94296200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:94280800-94282200	Weak transcription	Brain Germinal Matrix	brain
35	chr11:94280800-94282600	Weak transcription	Right Atrium	heart
36	chr11:94280800-94283000	Weak transcription	Brain Substantia Nigra	brain
37	chr11:94280800-94283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:94280800-94289800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:94281000-94282200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:94281000-94282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:94281000-94282600	Genic enhancers	Dnd41	blood
42	chr11:94281000-94283400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:94281000-94283400	Weak transcription	Fetal Thymus	thymus
44	chr11:94281000-94283600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr11:94281000-94289800	Weak transcription	Osteobl	bone
46	chr11:94281000-94290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:94281000-94290200	Weak transcription	NHDF-Ad	bronchial
48	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
49	chr11:94281200-94282400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:94281200-94282600	Enhancers	Primary B cells from cord blood	blood

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