Variant report

Variant	rs7926082
Chromosome Location	chr11:94283645-94283646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94281593..94285373-chr11:94288859..94293120,4	K562	blood:
2	chr11:94275296..94279180-chr11:94281967..94284010,3	MCF-7	breast:
3	chr11:94283631..94285642-chr11:94296776..94298809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10741490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831239	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020851	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1257380	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs591584	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6483346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6483348	0.84[ASN][1000 genomes]
rs7926234	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7927312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7946916	0.87[EUR][1000 genomes]
rs7950626	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9919636	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7926082	PIWIL4	cis	multi-tissue	Pritchard

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94279200-94296000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:94279400-94287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94279600-94284800	Weak transcription	Placenta	Placenta
4	chr11:94279600-94285800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:94279600-94287200	Weak transcription	Ovary	ovary
6	chr11:94279600-94290200	Weak transcription	HSMM	muscle
7	chr11:94280400-94285400	Weak transcription	Left Ventricle	heart
8	chr11:94280400-94286600	Weak transcription	Esophagus	oesophagus
9	chr11:94280400-94287200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:94280400-94287200	Weak transcription	Gastric	stomach
11	chr11:94280400-94291200	Weak transcription	NHLF	lung
12	chr11:94280600-94287200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:94280600-94296200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:94280800-94289800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:94281000-94289800	Weak transcription	Osteobl	bone
16	chr11:94281000-94290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:94281000-94290200	Weak transcription	NHDF-Ad	bronchial
18	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
19	chr11:94281200-94284000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:94281200-94284400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:94281400-94285600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:94281800-94283800	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:94281800-94284000	Enhancers	Fetal Brain Female	brain
24	chr11:94282000-94283800	Genic enhancers	Primary hematopoietic stem cells	blood
25	chr11:94282000-94283800	Enhancers	Brain Hippocampus Middle	brain
26	chr11:94282000-94284000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:94282000-94284200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:94282000-94296000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:94282200-94283800	Enhancers	Brain Germinal Matrix	brain
30	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
32	chr11:94282600-94284000	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:94282600-94285200	Weak transcription	Dnd41	blood
34	chr11:94282600-94290200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:94282600-94296200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:94282600-94298200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
38	chr11:94282800-94284000	Enhancers	Primary B cells from cord blood	blood
39	chr11:94282800-94284600	Enhancers	Fetal Intestine Large	intestine
40	chr11:94282800-94285400	Weak transcription	Fetal Lung	lung
41	chr11:94282800-94287400	Weak transcription	Small Intestine	intestine
42	chr11:94282800-94290200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:94282800-94291200	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:94283000-94283800	Enhancers	Brain Substantia Nigra	brain
45	chr11:94283000-94284400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr11:94283200-94283800	Enhancers	Thymus	Thymus
47	chr11:94283200-94284000	Enhancers	Colonic Mucosa	Colon
48	chr11:94283400-94283800	Enhancers	Fetal Brain Male	brain
49	chr11:94283400-94283800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:94283400-94283800	Enhancers	Stomach Mucosa	stomach

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