Variant report

Variant	rs7929056
Chromosome Location	chr11:94298506-94298507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94293118..94296029-chr11:94296941..94299181,2	K562	blood:
2	chr11:94296758..94299631-chr11:94304170..94305829,2	MCF-7	breast:
3	chr11:94283631..94285642-chr11:94296776..94298809,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10741490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831239	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020851	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1257380	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs591584	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6483346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6483348	0.83[ASN][1000 genomes]
rs7926082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926234	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7927312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946916	0.89[EUR][1000 genomes]
rs7950626	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9919636	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7929056	FUT4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94284200-94303400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:94293600-94322400	Weak transcription	Gastric	stomach
10	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
11	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
12	chr11:94296800-94298600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:94297200-94307400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:94297200-94307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:94297400-94300400	Weak transcription	Pancreas	Pancrea
17	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:94297600-94300400	Weak transcription	Small Intestine	intestine
19	chr11:94298000-94301200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:94298200-94299600	Weak transcription	K562	blood
21	chr11:94298200-94300400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:94298200-94300400	Weak transcription	Fetal Intestine Large	intestine
23	chr11:94298200-94300400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:94298200-94307000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:94298400-94307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links