Variant report

Variant	rs2514575
Chromosome Location	chr8:96249188-96249189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96239351..96241151-chr8:96247805..96249381,2	MCF-7	breast:
2	chr8:96247598..96249978-chr8:96254089..96255776,2	K562	blood:
3	chr8:96221181..96226002-chr8:96248062..96252220,6	MCF-7	breast:
4	chr8:96248174..96249978-chr8:96253878..96256406,3	K562	blood:
5	chr8:96039022..96041365-chr8:96246280..96249199,2	K562	blood:
6	chr8:96243081..96246840-chr8:96248821..96252281,5	K562	blood:
7	chr8:96244866..96247715-chr8:96248127..96251735,3	K562	blood:
8	chr8:96150317..96152962-chr8:96247980..96250492,2	K562	blood:
9	chr8:96241648..96244611-chr8:96247721..96251221,3	K562	blood:
10	chr8:96229389..96231464-chr8:96247771..96249721,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10110956	1.00[EUR][1000 genomes]
rs11984713	1.00[EUR][1000 genomes]
rs16917498	1.00[EUR][1000 genomes]
rs16917547	1.00[EUR][1000 genomes]
rs28663698	1.00[EUR][1000 genomes]
rs56037611	1.00[EUR][1000 genomes]
rs56102903	1.00[EUR][1000 genomes]
rs73266459	1.00[EUR][1000 genomes]
rs73695208	1.00[EUR][1000 genomes]
rs7839243	1.00[EUR][1000 genomes]
rs7840518	1.00[EUR][1000 genomes]
rs7845866	1.00[EUR][1000 genomes]
rs894148	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894150	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96219800-96251800	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:96235200-96249200	Enhancers	Primary B cells from cord blood	blood
3	chr8:96238800-96250200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:96244000-96250000	Weak transcription	Spleen	Spleen
7	chr8:96244200-96250200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:96245200-96254600	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
11	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
12	chr8:96248000-96249800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:96248200-96249800	Enhancers	GM12878-XiMat	blood
14	chr8:96248400-96262200	Weak transcription	HepG2	liver
15	chr8:96249000-96280800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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