Variant report

Variant	rs28663698
Chromosome Location	chr8:96444070-96444071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10110956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11984713	1.00[EUR][1000 genomes]
rs16917498	1.00[EUR][1000 genomes]
rs16917547	1.00[EUR][1000 genomes]
rs2514575	1.00[EUR][1000 genomes]
rs28479573	1.00[AMR][1000 genomes]
rs56037611	1.00[EUR][1000 genomes]
rs56102903	1.00[EUR][1000 genomes]
rs73266459	1.00[EUR][1000 genomes]
rs73695208	1.00[EUR][1000 genomes]
rs7839243	1.00[EUR][1000 genomes]
rs7840518	1.00[EUR][1000 genomes]
rs7845866	1.00[EUR][1000 genomes]
rs894148	1.00[EUR][1000 genomes]
rs894150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429930	chr8:96317910-96454743	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1026549	chr8:96367183-96573134	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539681	chr8:96367183-96573134	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031846	chr8:96380353-96501647	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv539682	chr8:96380353-96501647	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1030659	chr8:96380353-97142611	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv2761450	chr8:96392380-96461950	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv611760	chr8:96428448-96607028	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96441800-96444400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:96441800-96444400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:96442400-96444200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:96442400-96444400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:96442600-96444200	Enhancers	HSMMtube	muscle
6	chr8:96442800-96444200	Enhancers	Brain Germinal Matrix	brain
7	chr8:96442800-96444200	Enhancers	HSMM	muscle
8	chr8:96442800-96444200	Flanking Active TSS	Osteobl	bone
9	chr8:96442800-96444600	Enhancers	Fetal Stomach	stomach
10	chr8:96443000-96444200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:96443000-96444200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:96443000-96444200	Active TSS	Brain Hippocampus Middle	brain
13	chr8:96443000-96444200	Active TSS	Brain Substantia Nigra	brain
14	chr8:96443200-96444200	Active TSS	Brain Anterior Caudate	brain
15	chr8:96443200-96447800	Weak transcription	Fetal Lung	lung
16	chr8:96443400-96445000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:96443600-96444400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr8:96443800-96444200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:96443800-96444200	Enhancers	Adipose Nuclei	Adipose
20	chr8:96443800-96444200	Active TSS	Ovary	ovary
21	chr8:96443800-96447400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:96444000-96444200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:96444000-96444200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr8:96444000-96444200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr8:96444000-96444200	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr8:96444000-96444400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr8:96444000-96444400	Enhancers	Colon Smooth Muscle	Colon
28	chr8:96444000-96444600	Enhancers	Fetal Muscle Leg	muscle

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