Variant report

Variant	rs56102903
Chromosome Location	chr8:96374936-96374937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10110956	1.00[EUR][1000 genomes]
rs11984713	1.00[EUR][1000 genomes]
rs16917498	1.00[EUR][1000 genomes]
rs16917547	1.00[EUR][1000 genomes]
rs2514575	1.00[EUR][1000 genomes]
rs28663698	1.00[EUR][1000 genomes]
rs56037611	1.00[EUR][1000 genomes]
rs73266459	1.00[EUR][1000 genomes]
rs73695208	1.00[EUR][1000 genomes]
rs7839243	1.00[EUR][1000 genomes]
rs7840518	1.00[EUR][1000 genomes]
rs7845866	1.00[EUR][1000 genomes]
rs894148	1.00[EUR][1000 genomes]
rs894150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429930	chr8:96317910-96454743	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1026549	chr8:96367183-96573134	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539681	chr8:96367183-96573134	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96366400-96377000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:96374000-96375000	Enhancers	Fetal Intestine Small	intestine
3	chr8:96374600-96375600	Enhancers	GM12878-XiMat	blood
4	chr8:96374800-96375000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:96374800-96375000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:96374800-96376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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