Variant report

Variant	rs73266459
Chromosome Location	chr8:96235761-96235762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96234981..96237972-chr8:97273758..97275615,2	MCF-7	breast:
2	chr8:96204685..96206421-chr8:96234538..96236078,2	MCF-7	breast:
3	chr8:96077808..96080245-chr8:96234205..96235808,2	MCF-7	breast:
4	chr8:96222002..96228732-chr8:96228964..96237755,16	MCF-7	breast:
5	chr8:96234462..96239842-chr8:96279058..96283088,6	K562	blood:
6	chr8:96143360..96148175-chr8:96235522..96240876,10	MCF-7	breast:
7	chr8:96148421..96149927-chr8:96235607..96238590,2	K562	blood:
8	chr8:96222030..96225621-chr8:96235538..96238037,4	MCF-7	breast:
9	chr8:96111749..96114066-chr8:96234612..96236782,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000253351	Chromatin interaction
ENSG00000156469	Chromatin interaction
ENSG00000156471	Chromatin interaction
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10110956	1.00[EUR][1000 genomes]
rs11984713	1.00[EUR][1000 genomes]
rs16917498	1.00[EUR][1000 genomes]
rs16917547	1.00[EUR][1000 genomes]
rs2514573	1.00[AMR][1000 genomes]
rs2514575	1.00[EUR][1000 genomes]
rs28663698	1.00[EUR][1000 genomes]
rs56037611	1.00[EUR][1000 genomes]
rs56102903	1.00[EUR][1000 genomes]
rs73695208	1.00[EUR][1000 genomes]
rs7839243	1.00[EUR][1000 genomes]
rs7840518	1.00[EUR][1000 genomes]
rs7845866	1.00[EUR][1000 genomes]
rs894148	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs894150	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv523655	chr8:96205920-96239113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16466	chr8:96206151-96243934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv465741	chr8:96221122-96247835	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv611759	chr8:96221122-96247835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96219800-96251800	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:96223600-96237200	Weak transcription	Fetal Intestine Small	intestine
3	chr8:96225600-96236200	Weak transcription	Gastric	stomach
4	chr8:96228000-96238800	Weak transcription	Thymus	Thymus
5	chr8:96228800-96237600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:96231600-96237600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:96231600-96241600	Enhancers	Fetal Thymus	thymus
8	chr8:96231800-96237600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:96232600-96236000	Weak transcription	Adipose Nuclei	Adipose
10	chr8:96233000-96237000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:96233000-96237800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:96233200-96236000	Enhancers	NHEK	skin
13	chr8:96233200-96236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:96233200-96238800	Weak transcription	Spleen	Spleen
15	chr8:96233800-96237800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:96234000-96240000	Weak transcription	Primary T cells from cord blood	blood
17	chr8:96234200-96237400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:96234200-96237600	Weak transcription	Fetal Lung	lung
19	chr8:96234200-96238000	Weak transcription	GM12878-XiMat	blood
20	chr8:96234200-96239000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:96234800-96236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:96235000-96235800	Enhancers	Hela-S3	cervix
23	chr8:96235000-96235800	Enhancers	HMEC	breast
24	chr8:96235000-96235800	Enhancers	NHDF-Ad	bronchial
25	chr8:96235000-96239000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:96235000-96239600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:96235000-96239600	Enhancers	Placenta	Placenta
28	chr8:96235000-96242200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr8:96235200-96235800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:96235200-96235800	Enhancers	Osteobl	bone
31	chr8:96235200-96236400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:96235200-96237600	Enhancers	HepG2	liver
33	chr8:96235200-96238600	Enhancers	Left Ventricle	heart
34	chr8:96235200-96238800	Enhancers	Fetal Heart	heart
35	chr8:96235200-96239000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:96235200-96239000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:96235200-96239000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:96235200-96239600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:96235200-96249200	Enhancers	Primary B cells from cord blood	blood
40	chr8:96235400-96235800	Enhancers	Stomach Smooth Muscle	stomach
41	chr8:96235400-96235800	Enhancers	NHLF	lung
42	chr8:96235400-96236200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr8:96235400-96236400	Enhancers	Brain Angular Gyrus	brain
44	chr8:96235400-96236400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr8:96235400-96236400	Weak transcription	Brain Substantia Nigra	brain
46	chr8:96235400-96236400	Enhancers	Right Atrium	heart
47	chr8:96235400-96236400	Enhancers	HUVEC	blood vessel
48	chr8:96235400-96236600	Enhancers	Aorta	Aorta
49	chr8:96235400-96236600	Enhancers	HSMM	muscle
50	chr8:96235400-96236600	Enhancers	HSMMtube	muscle

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