Variant report

Variant rs2517678
Chromosome Location chr6:29933225-29933226
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29916800-29940200 Weak transcription Gastric stomach
2 chr6:29927800-29938800 Weak transcription Spleen Spleen
3 chr6:29932000-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr6:29932200-29933400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr6:29932200-29933800 Flanking Active TSS Brain Cingulate Gyrus brain
6 chr6:29932200-29934000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr6:29932200-29934000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
8 chr6:29932200-29934000 Enhancers Brain Germinal Matrix brain
9 chr6:29932200-29934200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr6:29932200-29934200 Flanking Active TSS Primary neutrophils fromperipheralblood blood
11 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
12 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr6:29932200-29934200 Flanking Active TSS Adipose Nuclei Adipose
14 chr6:29932200-29934200 Flanking Active TSS Colon Smooth Muscle Colon
15 chr6:29932200-29934200 Flanking Active TSS HMEC breast
16 chr6:29932200-29934400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
17 chr6:29932200-29934400 Flanking Active TSS Primary B cells from cord blood blood
18 chr6:29932200-29934600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr6:29932200-29934600 Flanking Active TSS Muscle Satellite Cultured Cells --
20 chr6:29932200-29934600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
21 chr6:29932200-29934600 Flanking Active TSS Dnd41 blood
22 chr6:29932200-29934800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
23 chr6:29932200-29934800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
24 chr6:29932200-29934800 Enhancers Primary B cells from peripheral blood blood
25 chr6:29932200-29934800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
26 chr6:29932200-29935600 Enhancers Fetal Lung lung
27 chr6:29932200-29936200 Enhancers Fetal Intestine Small intestine
28 chr6:29932400-29933400 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
29 chr6:29932400-29933600 Active TSS Psoas Muscle Psoas
30 chr6:29932400-29934000 Flanking Active TSS Primary T cells from cord blood blood
31 chr6:29932400-29934000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr6:29932400-29934000 Active TSS Left Ventricle heart
33 chr6:29932400-29934200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
34 chr6:29932400-29934200 Flanking Active TSS Brain Hippocampus Middle brain
35 chr6:29932400-29934200 Flanking Active TSS HUVEC blood vessel
36 chr6:29932400-29934200 Flanking Active TSS NHEK skin
37 chr6:29932400-29934400 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr6:29932400-29934400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
39 chr6:29932400-29935000 Flanking Active TSS Duodenum Mucosa Duodenum
40 chr6:29932400-29935000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
41 chr6:29932600-29933400 Active TSS Duodenum Smooth Muscle Duodenum
42 chr6:29932600-29933600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
43 chr6:29932600-29933600 Flanking Active TSS Cortex derived primary cultured neurospheres brain
44 chr6:29932600-29933600 Active TSS Pancreatic Islets Pancreatic Islet
45 chr6:29932600-29934200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr6:29932600-29934200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr6:29932600-29934200 Flanking Active TSS Stomach Smooth Muscle stomach
48 chr6:29932600-29934200 Active TSS A549 lung
49 chr6:29932600-29934200 Flanking Active TSS NHLF lung
50 chr6:29932600-29934200 Flanking Active TSS Osteobl bone

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