The 2.0 version of rSNPBase

Variant report

Variant rs2546191
Chromosome Location chr5:95232541-95232542
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:95213000-95244600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr5:95214400-95234200 Weak transcription Fetal Brain Female brain
3 chr5:95214400-95247800 Weak transcription Rectal Smooth Muscle rectum
4 chr5:95214400-95251800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:95215200-95234200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr5:95215800-95244600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr5:95218000-95242200 Weak transcription Spleen Spleen
8 chr5:95218200-95246200 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr5:95219800-95244400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr5:95220000-95242000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr5:95220000-95245200 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr5:95220200-95235400 Weak transcription Primary hematopoietic stem cells blood
13 chr5:95220400-95236800 Strong transcription HMEC breast
14 chr5:95220600-95236200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr5:95220600-95243200 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr5:95220800-95234000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr5:95220800-95235400 Strong transcription Muscle Satellite Cultured Cells --
18 chr5:95220800-95235600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:95220800-95237200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr5:95220800-95237200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr5:95220800-95240800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr5:95221000-95236600 Strong transcription NH-A brain
23 chr5:95221400-95236200 Strong transcription HSMM muscle
24 chr5:95221600-95235800 Strong transcription Osteobl bone
25 chr5:95221600-95252200 Weak transcription Primary T cells fromperipheralblood blood
26 chr5:95221800-95233600 Weak transcription Fetal Lung lung
27 chr5:95222000-95241600 Strong transcription GM12878-XiMat blood
28 chr5:95222000-95252200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr5:95222800-95232600 Strong transcription NHLF lung
30 chr5:95222800-95235600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr5:95223000-95259800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr5:95223400-95237600 Strong transcription Placenta Placenta
33 chr5:95223800-95234800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
34 chr5:95223800-95237000 Strong transcription NHEK skin
35 chr5:95224000-95237600 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr5:95224200-95237600 Weak transcription Stomach Mucosa stomach
37 chr5:95225000-95236400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr5:95226000-95236600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr5:95226000-95237600 Weak transcription Fetal Kidney kidney
40 chr5:95226400-95263600 Weak transcription Colonic Mucosa Colon
41 chr5:95227400-95232600 Strong transcription HepG2 liver
42 chr5:95227400-95236000 Strong transcription Hela-S3 cervix
43 chr5:95227400-95251600 Weak transcription Primary T cells from cord blood blood
44 chr5:95227400-95253800 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr5:95227600-95236400 Weak transcription Colon Smooth Muscle Colon
46 chr5:95227600-95242400 Weak transcription Placenta Amnion Placenta Amnion
47 chr5:95227600-95244600 Weak transcription Small Intestine intestine
48 chr5:95227800-95232600 Weak transcription A549 lung
49 chr5:95227800-95233400 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr5:95229400-95234800 Strong transcription Liver Liver

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Last update: Aug 31, 2015