Variant report

Variant	rs2549508
Chromosome Location	chr16:79547564-79547565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79542138..79545061-chr16:79546534..79548367,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2549509	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2549510	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2549511	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2549512	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2549513	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2720442	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2720443	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2720444	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4261550	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325576	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4340339	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356491	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4360951	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4360952	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362403	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4433821	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4578664	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888992	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888993	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888994	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888995	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62041965	1.00[ASN][1000 genomes]
rs7200487	0.95[ASN][1000 genomes]
rs7204185	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7204211	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049236	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8051108	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8052284	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9929637	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9939518	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9939519	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2754467	chr16:79539799-79598399	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79539800-79553000	Weak transcription	Right Atrium	heart
2	chr16:79543400-79547800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr16:79544000-79549600	Weak transcription	Aorta	Aorta
4	chr16:79546800-79547600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:79547200-79547600	Enhancers	Adipose Nuclei	Adipose
6	chr16:79547200-79547800	Bivalent Enhancer	Fetal Stomach	stomach
7	chr16:79547200-79548600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr16:79547200-79549200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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