Variant report

Variant	rs62041965
Chromosome Location	chr16:79551227-79551228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2549508	1.00[ASN][1000 genomes]
rs2549509	0.98[ASN][1000 genomes]
rs2549510	0.95[ASN][1000 genomes]
rs2549511	0.98[ASN][1000 genomes]
rs2549512	0.98[ASN][1000 genomes]
rs2549513	1.00[ASN][1000 genomes]
rs2720442	0.98[ASN][1000 genomes]
rs2720443	0.98[ASN][1000 genomes]
rs2720444	0.98[ASN][1000 genomes]
rs4261550	0.95[ASN][1000 genomes]
rs4325576	0.86[ASN][1000 genomes]
rs4340339	1.00[ASN][1000 genomes]
rs4356491	1.00[ASN][1000 genomes]
rs4360951	1.00[ASN][1000 genomes]
rs4360952	1.00[ASN][1000 genomes]
rs4362403	0.95[ASN][1000 genomes]
rs4433821	0.86[ASN][1000 genomes]
rs4578664	1.00[ASN][1000 genomes]
rs4888992	0.98[ASN][1000 genomes]
rs4888993	0.98[ASN][1000 genomes]
rs4888994	0.98[ASN][1000 genomes]
rs4888995	0.95[ASN][1000 genomes]
rs7200487	0.95[ASN][1000 genomes]
rs7204185	1.00[ASN][1000 genomes]
rs7204211	1.00[ASN][1000 genomes]
rs8049236	0.91[ASN][1000 genomes]
rs8051108	0.95[ASN][1000 genomes]
rs8052284	0.98[ASN][1000 genomes]
rs9929637	0.98[ASN][1000 genomes]
rs9939518	0.98[ASN][1000 genomes]
rs9939519	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2754467	chr16:79539799-79598399	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79539800-79553000	Weak transcription	Right Atrium	heart
2	chr16:79547600-79553000	Weak transcription	Adipose Nuclei	Adipose
3	chr16:79551000-79551400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr16:79551200-79553000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links