Variant report
| Variant | rs7200487 |
|---|---|
| Chromosome Location | chr16:79536059-79536060 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:79530729..79533323-chr16:79534418..79537538,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261472 | TF binding region |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs2549508 | 0.95[ASN][1000 genomes] |
| rs2549509 | 0.93[ASN][1000 genomes] |
| rs2549510 | 0.91[ASN][1000 genomes] |
| rs2549511 | 0.93[ASN][1000 genomes] |
| rs2549512 | 0.93[ASN][1000 genomes] |
| rs2549513 | 0.95[ASN][1000 genomes] |
| rs2720442 | 0.93[ASN][1000 genomes] |
| rs2720443 | 0.93[ASN][1000 genomes] |
| rs2720444 | 0.93[ASN][1000 genomes] |
| rs4261550 | 0.91[ASN][1000 genomes] |
| rs4325576 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4340339 | 0.95[ASN][1000 genomes] |
| rs4356491 | 0.95[ASN][1000 genomes] |
| rs4360951 | 0.95[ASN][1000 genomes] |
| rs4360952 | 0.95[ASN][1000 genomes] |
| rs4362403 | 0.91[ASN][1000 genomes] |
| rs4433821 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4578664 | 0.95[ASN][1000 genomes] |
| rs4888992 | 0.93[ASN][1000 genomes] |
| rs4888993 | 0.93[ASN][1000 genomes] |
| rs4888994 | 0.93[ASN][1000 genomes] |
| rs4888995 | 0.91[ASN][1000 genomes] |
| rs62041965 | 0.95[ASN][1000 genomes] |
| rs7204185 | 0.95[ASN][1000 genomes] |
| rs7204211 | 0.95[ASN][1000 genomes] |
| rs8049236 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs8051108 | 0.91[ASN][1000 genomes] |
| rs8052284 | 0.93[ASN][1000 genomes] |
| rs9929637 | 0.93[ASN][1000 genomes] |
| rs9939518 | 0.93[ASN][1000 genomes] |
| rs9939519 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915801 | chr16:78957628-79541700 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:79535800-79539600 | Weak transcription | Right Atrium | heart |
