Variant report
| Variant | rs4433821 |
|---|---|
| Chromosome Location | chr16:79533329-79533330 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:79456746..79458382-chr16:79532860..79535329,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs2549508 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2549509 | 0.83[ASN][1000 genomes] |
| rs2549510 | 0.81[ASN][1000 genomes] |
| rs2549511 | 0.83[ASN][1000 genomes] |
| rs2549512 | 0.83[ASN][1000 genomes] |
| rs2549513 | 0.86[ASN][1000 genomes] |
| rs2720442 | 0.83[ASN][1000 genomes] |
| rs2720443 | 0.83[ASN][1000 genomes] |
| rs2720444 | 0.83[ASN][1000 genomes] |
| rs4261550 | 0.81[ASN][1000 genomes] |
| rs4325576 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4340339 | 0.86[ASN][1000 genomes] |
| rs4356491 | 0.86[ASN][1000 genomes] |
| rs4360951 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4360952 | 0.86[ASN][1000 genomes] |
| rs4362403 | 0.81[ASN][1000 genomes] |
| rs4578664 | 0.86[ASN][1000 genomes] |
| rs4888992 | 0.83[ASN][1000 genomes] |
| rs4888993 | 0.83[ASN][1000 genomes] |
| rs4888994 | 0.83[ASN][1000 genomes] |
| rs4888995 | 0.81[ASN][1000 genomes] |
| rs62041965 | 0.86[ASN][1000 genomes] |
| rs7200487 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7204185 | 0.86[ASN][1000 genomes] |
| rs7204211 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8049236 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8051108 | 0.81[ASN][1000 genomes] |
| rs8052284 | 0.83[ASN][1000 genomes] |
| rs9929637 | 0.83[ASN][1000 genomes] |
| rs9939518 | 0.83[ASN][1000 genomes] |
| rs9939519 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915801 | chr16:78957628-79541700 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:79531200-79533400 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
| 2 | chr16:79531800-79533400 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
