Variant report

Variant	rs2562418
Chromosome Location	chr19:21632361-21632362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10403785	0.82[AFR][1000 genomes]
rs10414463	0.84[AFR][1000 genomes]
rs10420451	0.82[AFR][1000 genomes]
rs10426240	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11878290	1.00[AMR][1000 genomes]
rs11878313	1.00[AMR][1000 genomes]
rs11878341	1.00[AMR][1000 genomes]
rs11878352	1.00[AMR][1000 genomes]
rs11878379	1.00[AMR][1000 genomes]
rs11878890	1.00[AMR][1000 genomes]
rs11879116	1.00[AMR][1000 genomes]
rs11879186	1.00[AMR][1000 genomes]
rs11880052	1.00[AMR][1000 genomes]
rs11880057	1.00[AMR][1000 genomes]
rs11880270	1.00[AMR][1000 genomes]
rs11880290	1.00[AMR][1000 genomes]
rs11880668	1.00[AMR][1000 genomes]
rs11880717	1.00[AMR][1000 genomes]
rs11882098	1.00[AMR][1000 genomes]
rs11882885	1.00[AMR][1000 genomes]
rs11882927	1.00[AMR][1000 genomes]
rs11883296	1.00[AMR][1000 genomes]
rs1500399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1612863	1.00[AMR][1000 genomes]
rs1613729	1.00[AMR][1000 genomes]
rs1618904	1.00[AMR][1000 genomes]
rs1619077	1.00[AMR][1000 genomes]
rs1620666	1.00[AMR][1000 genomes]
rs1620856	1.00[AMR][1000 genomes]
rs1678817	1.00[AMR][1000 genomes]
rs1678818	1.00[AMR][1000 genomes]
rs1678819	1.00[AMR][1000 genomes]
rs1678820	1.00[AMR][1000 genomes]
rs1678821	1.00[AMR][1000 genomes]
rs1678823	1.00[AMR][1000 genomes]
rs1678824	1.00[AMR][1000 genomes]
rs1678826	1.00[AMR][1000 genomes]
rs1678827	1.00[AMR][1000 genomes]
rs1678828	1.00[AMR][1000 genomes]
rs1678829	1.00[AMR][1000 genomes]
rs1678830	1.00[AMR][1000 genomes]
rs1762567	1.00[AMR][1000 genomes]
rs1762568	1.00[AMR][1000 genomes]
rs1762570	1.00[AMR][1000 genomes]
rs1762571	1.00[AMR][1000 genomes]
rs1762572	1.00[AMR][1000 genomes]
rs1762573	1.00[AMR][1000 genomes]
rs1762574	1.00[AMR][1000 genomes]
rs1762575	1.00[AMR][1000 genomes]
rs1762577	1.00[AMR][1000 genomes]
rs1781851	1.00[AMR][1000 genomes]
rs1781852	1.00[AMR][1000 genomes]
rs1781855	1.00[AMR][1000 genomes]
rs1781858	1.00[AMR][1000 genomes]
rs1781864	1.00[AMR][1000 genomes]
rs1781866	1.00[AMR][1000 genomes]
rs1781868	1.00[AMR][1000 genomes]
rs1781869	1.00[AMR][1000 genomes]
rs1781870	1.00[AMR][1000 genomes]
rs1781871	1.00[AMR][1000 genomes]
rs1983017	0.89[AFR][1000 genomes]
rs1983018	0.89[AFR][1000 genomes]
rs1983019	0.89[AFR][1000 genomes]
rs2009347	0.84[AFR][1000 genomes]
rs2013529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2088760	0.84[AFR][1000 genomes]
rs2105448	1.00[AMR][1000 genomes]
rs2173725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2255010	0.82[AFR][1000 genomes]
rs2255100	0.84[AFR][1000 genomes]
rs2537688	1.00[AMR][1000 genomes]
rs2537694	1.00[AMR][1000 genomes]
rs2562423	1.00[AMR][1000 genomes]
rs2562424	0.81[AFR][1000 genomes]
rs2562425	0.82[AFR][1000 genomes]
rs2562426	1.00[AMR][1000 genomes]
rs2562431	0.82[AFR][1000 genomes]
rs2562475	0.89[AFR][1000 genomes]
rs2562476	0.89[AFR][1000 genomes]
rs2562477	0.89[AFR][1000 genomes]
rs2562478	0.87[AFR][1000 genomes]
rs2562479	0.89[AFR][1000 genomes]
rs2562480	0.89[AFR][1000 genomes]
rs2562481	0.81[AFR][1000 genomes]
rs2562482	0.87[AFR][1000 genomes]
rs2562485	0.84[AFR][1000 genomes]
rs2562486	0.87[AFR][1000 genomes]
rs2562488	0.87[AFR][1000 genomes]
rs2562489	0.82[AFR][1000 genomes]
rs2562490	0.81[AFR][1000 genomes]
rs2650761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2650762	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2650765	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2650795	1.00[AMR][1000 genomes]
rs2650796	0.82[AFR][1000 genomes]
rs2650813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2650816	0.82[AFR][1000 genomes]
rs2650818	0.82[AFR][1000 genomes]
rs2650820	0.87[AFR][1000 genomes]
rs2650821	0.87[AFR][1000 genomes]
rs2650822	0.87[AFR][1000 genomes]
rs2650823	0.87[AFR][1000 genomes]
rs2650837	0.84[AFR][1000 genomes]
rs2801870	1.00[AMR][1000 genomes]
rs28580140	0.82[AFR][1000 genomes]
rs28581819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2968077	0.82[AFR][1000 genomes]
rs34447812	1.00[AMR][1000 genomes]
rs34475475	1.00[AMR][1000 genomes]
rs34713529	1.00[AMR][1000 genomes]
rs34806732	1.00[AMR][1000 genomes]
rs35147475	1.00[AMR][1000 genomes]
rs35678983	1.00[AMR][1000 genomes]
rs36151394	1.00[AMR][1000 genomes]
rs36168893	1.00[AMR][1000 genomes]
rs6511266	1.00[AMR][1000 genomes]
rs72620584	1.00[AMR][1000 genomes]
rs7343074	1.00[AMR][1000 genomes]
rs7343111	1.00[AMR][1000 genomes]
rs7343124	1.00[AMR][1000 genomes]
rs7343143	1.00[AMR][1000 genomes]
rs987772	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv138282	chr19:21625797-21634841	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21622400-21632600	Weak transcription	Brain Hippocampus Middle	brain
2	chr19:21624600-21636400	Weak transcription	Fetal Kidney	kidney
3	chr19:21629800-21641400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr19:21630000-21633000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:21630000-21642000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:21630200-21634600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr19:21630200-21643800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:21630400-21635400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr19:21630400-21643800	ZNF genes & repeats	Dnd41	blood
10	chr19:21630800-21635000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr19:21631000-21632400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr19:21631000-21634600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:21631000-21638400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:21631200-21632400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:21631200-21632600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr19:21631400-21632400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:21631400-21632400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr19:21631400-21632400	Strong transcription	Ovary	ovary
19	chr19:21631400-21635200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr19:21631400-21635400	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:21631600-21632400	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:21631600-21632400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
23	chr19:21631600-21632400	ZNF genes & repeats	Thymus	Thymus
24	chr19:21631600-21632600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
25	chr19:21631600-21634600	ZNF genes & repeats	Fetal Stomach	stomach
26	chr19:21631800-21638200	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr19:21632000-21637200	Weak transcription	Primary T cells from cord blood	blood
28	chr19:21632200-21633400	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr19:21632200-21633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:21632200-21634600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:21632200-21637000	Weak transcription	Fetal Lung	lung
32	chr19:21632200-21638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr19:21632200-21638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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