Variant report

Variant	rs1678830
Chromosome Location	chr19:21509629-21509630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10426240	1.00[AMR][1000 genomes]
rs11878313	1.00[AMR][1000 genomes]
rs11878341	1.00[AMR][1000 genomes]
rs11878352	1.00[AMR][1000 genomes]
rs11882098	1.00[AMR][1000 genomes]
rs1500399	1.00[AMR][1000 genomes]
rs1612863	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1613729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1617506	1.00[AMR][1000 genomes]
rs1618904	1.00[AMR][1000 genomes]
rs1619077	1.00[AMR][1000 genomes]
rs1620666	1.00[AMR][1000 genomes]
rs1620856	1.00[AMR][1000 genomes]
rs1630930	1.00[AMR][1000 genomes]
rs1645802	1.00[AMR][1000 genomes]
rs1645803	1.00[AMR][1000 genomes]
rs1645805	1.00[AMR][1000 genomes]
rs1678817	1.00[AMR][1000 genomes]
rs1678818	1.00[AMR][1000 genomes]
rs1678819	1.00[AMR][1000 genomes]
rs1678820	1.00[AMR][1000 genomes]
rs1678821	1.00[AMR][1000 genomes]
rs1678823	1.00[AMR][1000 genomes]
rs1678824	1.00[AMR][1000 genomes]
rs1678826	1.00[AMR][1000 genomes]
rs1678827	1.00[AMR][1000 genomes]
rs1678828	1.00[AMR][1000 genomes]
rs1678829	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1762551	1.00[AMR][1000 genomes]
rs1762552	1.00[AMR][1000 genomes]
rs1762553	1.00[AMR][1000 genomes]
rs1762557	1.00[AMR][1000 genomes]
rs1762558	1.00[AMR][1000 genomes]
rs1762567	1.00[AMR][1000 genomes]
rs1762568	1.00[AMR][1000 genomes]
rs1762570	1.00[AMR][1000 genomes]
rs1762571	1.00[AMR][1000 genomes]
rs1762572	1.00[AMR][1000 genomes]
rs1762573	1.00[AMR][1000 genomes]
rs1762574	1.00[AMR][1000 genomes]
rs1762575	1.00[AMR][1000 genomes]
rs1762577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1762581	1.00[AMR][1000 genomes]
rs1762582	1.00[AMR][1000 genomes]
rs1762584	1.00[AMR][1000 genomes]
rs1762586	1.00[AMR][1000 genomes]
rs1762588	1.00[AMR][1000 genomes]
rs1762589	1.00[AMR][1000 genomes]
rs1762593	1.00[AMR][1000 genomes]
rs1781843	1.00[AMR][1000 genomes]
rs1781851	1.00[AMR][1000 genomes]
rs1781852	1.00[AMR][1000 genomes]
rs1781855	1.00[AMR][1000 genomes]
rs1781858	1.00[AMR][1000 genomes]
rs1781864	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781866	1.00[AMR][1000 genomes]
rs1781868	1.00[AMR][1000 genomes]
rs1781869	1.00[AMR][1000 genomes]
rs1781870	1.00[AMR][1000 genomes]
rs1781871	1.00[AMR][1000 genomes]
rs1781876	1.00[AMR][1000 genomes]
rs1781877	1.00[AMR][1000 genomes]
rs1781878	1.00[AMR][1000 genomes]
rs1781881	1.00[AMR][1000 genomes]
rs1781885	1.00[AMR][1000 genomes]
rs1781889	1.00[AMR][1000 genomes]
rs1781891	1.00[AMR][1000 genomes]
rs1781892	1.00[AMR][1000 genomes]
rs1781894	1.00[AMR][1000 genomes]
rs2013529	1.00[AMR][1000 genomes]
rs2105448	1.00[AMR][1000 genomes]
rs2173725	1.00[AMR][1000 genomes]
rs2537688	1.00[AMR][1000 genomes]
rs2537694	1.00[AMR][1000 genomes]
rs2562418	1.00[AMR][1000 genomes]
rs2562423	1.00[AMR][1000 genomes]
rs2562426	1.00[AMR][1000 genomes]
rs2650761	1.00[AMR][1000 genomes]
rs2650762	1.00[AMR][1000 genomes]
rs2650765	1.00[AMR][1000 genomes]
rs2650795	1.00[AMR][1000 genomes]
rs2650813	1.00[AMR][1000 genomes]
rs2801870	1.00[AMR][1000 genomes]
rs28581819	1.00[AMR][1000 genomes]
rs34447812	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv963023	chr19:21491992-21570395	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21473800-21510400	Weak transcription	Fetal Heart	heart
2	chr19:21474800-21509800	Weak transcription	Fetal Brain Male	brain
3	chr19:21475200-21511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:21484400-21511000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:21485400-21511200	Weak transcription	Gastric	stomach
6	chr19:21487600-21511200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:21488200-21511200	Weak transcription	Aorta	Aorta
8	chr19:21489000-21510800	Weak transcription	NH-A	brain
9	chr19:21496800-21509800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:21497600-21511000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:21498400-21510600	Weak transcription	HUVEC	blood vessel
12	chr19:21498400-21511200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr19:21498800-21510400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr19:21501000-21510600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr19:21501000-21511200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr19:21501000-21511200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:21501000-21511200	Weak transcription	Psoas Muscle	Psoas
18	chr19:21501200-21510800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:21504400-21510800	Weak transcription	Right Atrium	heart
20	chr19:21504800-21510400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr19:21505000-21510400	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:21505000-21510600	Weak transcription	Left Ventricle	heart
23	chr19:21505000-21511200	Weak transcription	Pancreas	Pancrea
24	chr19:21505400-21511000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr19:21505800-21510400	Weak transcription	HSMMtube	muscle
26	chr19:21506400-21510400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:21506400-21510400	Weak transcription	HMEC	breast
28	chr19:21506400-21510600	Weak transcription	Right Ventricle	heart
29	chr19:21506400-21510800	Weak transcription	Osteobl	bone
30	chr19:21506400-21511000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr19:21506600-21510400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr19:21506600-21510600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr19:21506600-21510600	Weak transcription	Adipose Nuclei	Adipose
34	chr19:21506600-21510800	Weak transcription	Stomach Mucosa	stomach
35	chr19:21506800-21510400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr19:21506800-21510400	Weak transcription	HepG2	liver
37	chr19:21507000-21511200	Weak transcription	Colonic Mucosa	Colon
38	chr19:21507400-21510400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr19:21507800-21510800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:21508600-21509800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr19:21508600-21509800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:21508600-21509800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr19:21508600-21509800	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr19:21508600-21510400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr19:21508800-21509800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr19:21508800-21509800	Strong transcription	Fetal Intestine Large	intestine
47	chr19:21508800-21510600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:21508800-21510800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr19:21509000-21509800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr19:21509000-21510000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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