Variant report

Variant	rs1781868
Chromosome Location	chr19:21494853-21494854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21482877..21485011-chr19:21492555..21495180,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10426240	1.00[AMR][1000 genomes]
rs1500399	1.00[AMR][1000 genomes]
rs1612863	1.00[AMR][1000 genomes]
rs1613729	1.00[AMR][1000 genomes]
rs1617506	1.00[AMR][1000 genomes]
rs1618904	1.00[AMR][1000 genomes]
rs1619077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1620666	1.00[AMR][1000 genomes]
rs1620856	1.00[AMR][1000 genomes]
rs1630930	1.00[AMR][1000 genomes]
rs1645802	1.00[AMR][1000 genomes]
rs1645803	1.00[AMR][1000 genomes]
rs1645805	1.00[AMR][1000 genomes]
rs1678817	1.00[AMR][1000 genomes]
rs1678818	1.00[AMR][1000 genomes]
rs1678819	1.00[AMR][1000 genomes]
rs1678820	1.00[AMR][1000 genomes]
rs1678821	1.00[AMR][1000 genomes]
rs1678823	1.00[AMR][1000 genomes]
rs1678824	1.00[AMR][1000 genomes]
rs1678826	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1678827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1678828	1.00[AMR][1000 genomes]
rs1678829	1.00[AMR][1000 genomes]
rs1678830	1.00[AMR][1000 genomes]
rs1762551	1.00[AMR][1000 genomes]
rs1762552	1.00[AMR][1000 genomes]
rs1762553	1.00[AMR][1000 genomes]
rs1762557	1.00[AMR][1000 genomes]
rs1762558	1.00[AMR][1000 genomes]
rs1762567	1.00[AMR][1000 genomes]
rs1762568	1.00[AMR][1000 genomes]
rs1762570	1.00[AMR][1000 genomes]
rs1762571	1.00[AMR][1000 genomes]
rs1762572	1.00[AMR][1000 genomes]
rs1762573	1.00[AMR][1000 genomes]
rs1762574	1.00[AMR][1000 genomes]
rs1762575	1.00[AMR][1000 genomes]
rs1762577	1.00[AMR][1000 genomes]
rs1762581	1.00[AMR][1000 genomes]
rs1762582	1.00[AMR][1000 genomes]
rs1762584	1.00[AMR][1000 genomes]
rs1762586	1.00[AMR][1000 genomes]
rs1762588	1.00[AMR][1000 genomes]
rs1762589	1.00[AMR][1000 genomes]
rs1762593	1.00[AMR][1000 genomes]
rs1781843	1.00[AMR][1000 genomes]
rs1781851	1.00[AMR][1000 genomes]
rs1781852	1.00[AMR][1000 genomes]
rs1781855	1.00[AMR][1000 genomes]
rs1781858	1.00[AMR][1000 genomes]
rs1781864	1.00[AMR][1000 genomes]
rs1781866	1.00[AMR][1000 genomes]
rs1781869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781871	1.00[AMR][1000 genomes]
rs1781876	1.00[AMR][1000 genomes]
rs1781877	1.00[AMR][1000 genomes]
rs1781878	1.00[AMR][1000 genomes]
rs1781881	1.00[AMR][1000 genomes]
rs1781885	1.00[AMR][1000 genomes]
rs1781889	1.00[AMR][1000 genomes]
rs1781891	1.00[AMR][1000 genomes]
rs1781892	1.00[AMR][1000 genomes]
rs1781894	1.00[AMR][1000 genomes]
rs2013529	1.00[AMR][1000 genomes]
rs2105448	1.00[AMR][1000 genomes]
rs2173725	1.00[AMR][1000 genomes]
rs2537688	1.00[AMR][1000 genomes]
rs2537694	1.00[AMR][1000 genomes]
rs2562418	1.00[AMR][1000 genomes]
rs2562423	1.00[AMR][1000 genomes]
rs2562426	1.00[AMR][1000 genomes]
rs2650761	1.00[AMR][1000 genomes]
rs2650762	1.00[AMR][1000 genomes]
rs2650765	1.00[AMR][1000 genomes]
rs2650795	1.00[AMR][1000 genomes]
rs2650813	1.00[AMR][1000 genomes]
rs2801870	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28581819	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv963023	chr19:21491992-21570395	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21465000-21496000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:21473800-21510400	Weak transcription	Fetal Heart	heart
3	chr19:21474800-21509800	Weak transcription	Fetal Brain Male	brain
4	chr19:21475200-21511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:21476800-21497600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:21477200-21495000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr19:21477600-21495800	Weak transcription	HepG2	liver
8	chr19:21478000-21497400	Weak transcription	Colon Smooth Muscle	Colon
9	chr19:21478400-21500600	Weak transcription	Psoas Muscle	Psoas
10	chr19:21478600-21499200	Weak transcription	HMEC	breast
11	chr19:21481000-21500600	Weak transcription	NHLF	lung
12	chr19:21481600-21500000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr19:21481600-21500400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:21481600-21505600	Weak transcription	K562	blood
15	chr19:21484400-21511000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr19:21485200-21495000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr19:21485400-21508600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:21485400-21511200	Weak transcription	Gastric	stomach
19	chr19:21485600-21497600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:21485600-21504200	Weak transcription	Pancreas	Pancrea
21	chr19:21486400-21500400	Weak transcription	Spleen	Spleen
22	chr19:21487400-21495200	Weak transcription	Brain Angular Gyrus	brain
23	chr19:21487400-21496800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr19:21487600-21508600	Weak transcription	Fetal Kidney	kidney
25	chr19:21487600-21511200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr19:21487800-21495400	Weak transcription	A549	lung
27	chr19:21487800-21498200	Weak transcription	HUVEC	blood vessel
28	chr19:21488000-21500600	Weak transcription	Left Ventricle	heart
29	chr19:21488000-21505600	Weak transcription	Right Ventricle	heart
30	chr19:21488200-21511200	Weak transcription	Aorta	Aorta
31	chr19:21488400-21500000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr19:21489000-21496800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr19:21489000-21510800	Weak transcription	NH-A	brain
34	chr19:21489400-21495200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr19:21489600-21495400	Weak transcription	Brain Anterior Caudate	brain
36	chr19:21489600-21500600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr19:21489600-21506000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr19:21489600-21509000	Weak transcription	Placenta	Placenta
39	chr19:21489800-21500800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr19:21489800-21504000	Weak transcription	Osteobl	bone
41	chr19:21490200-21508800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:21490200-21509200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:21490400-21495400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr19:21491200-21495600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:21491600-21495000	Strong transcription	Primary B cells from cord blood	blood
46	chr19:21492200-21500600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:21492400-21495000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:21492400-21495200	Weak transcription	HSMMtube	muscle
49	chr19:21492400-21496800	Weak transcription	Colonic Mucosa	Colon
50	chr19:21492400-21497400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links