Variant report

Variant	rs2576155
Chromosome Location	chr10:90339593-90339594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10509547	0.82[CEU][hapmap]
rs10509548	0.81[CEU][hapmap]
rs10509549	0.81[CEU][hapmap]
rs10509550	0.81[CEU][hapmap]
rs10736359	0.86[AMR][1000 genomes]
rs10736360	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10736361	1.00[ASN][1000 genomes]
rs11816967	0.82[CEU][hapmap]
rs1325899	0.81[CEU][hapmap]
rs1325904	0.83[AMR][1000 genomes]
rs1359581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359582	0.81[CEU][hapmap];0.92[AMR][1000 genomes]
rs1409133	0.88[AMR][1000 genomes]
rs1409136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555839	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs1555842	1.00[ASN][1000 genomes]
rs1573074	0.81[CEU][hapmap]
rs1594602	1.00[CHB][hapmap]
rs17336288	0.86[CEU][hapmap]
rs17426488	0.82[CEU][hapmap]
rs1980813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057641	1.00[ASN][1000 genomes]
rs2182304	1.00[ASN][1000 genomes]
rs2477959	0.88[AMR][1000 genomes]
rs2576158	0.86[AMR][1000 genomes]
rs2576162	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs2576163	0.81[CEU][hapmap];0.92[AMR][1000 genomes]
rs2576167	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2765451	0.82[CEU][hapmap]
rs2765453	0.82[CEU][hapmap]
rs2901950	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs701824	1.00[ASN][1000 genomes]
rs750508	1.00[ASN][1000 genomes]
rs7900987	1.00[ASN][1000 genomes]
rs7913742	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917696	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs814633	1.00[ASN][1000 genomes]
rs814634	1.00[ASN][1000 genomes]
rs814635	1.00[ASN][1000 genomes]
rs860949	1.00[ASN][1000 genomes]
rs875050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1037657	chr10:90329910-90367890	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv551839	chr10:90334835-90422136	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90312200-90342400	Weak transcription	Ovary	ovary
2	chr10:90315400-90342400	Weak transcription	Aorta	Aorta
3	chr10:90317800-90341800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:90319200-90342000	Weak transcription	Pancreas	Pancrea
5	chr10:90321000-90342000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:90326800-90342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:90331000-90341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:90331000-90342400	Weak transcription	Psoas Muscle	Psoas
9	chr10:90331400-90342400	Weak transcription	Left Ventricle	heart
10	chr10:90331600-90342400	Weak transcription	Esophagus	oesophagus
11	chr10:90331800-90342000	Weak transcription	Gastric	stomach
12	chr10:90337800-90341800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:90337800-90341800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links