Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10509547	0.95[CEU][hapmap]
rs10509548	0.95[CEU][hapmap]
rs10509549	0.95[CEU][hapmap]
rs10509550	0.95[CEU][hapmap]
rs10736359	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11816967	0.90[CEU][hapmap]
rs1325899	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1325901	0.91[CEU][hapmap]
rs1325904	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1342457	1.00[CEU][hapmap]
rs1359581	0.94[CEU][hapmap];0.83[AMR][1000 genomes]
rs1359582	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1409133	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1409136	0.86[AMR][1000 genomes]
rs1555839	0.80[CEU][hapmap]
rs1573074	0.95[CEU][hapmap]
rs17334741	0.82[CEU][hapmap]
rs17336288	0.95[CEU][hapmap]
rs17426488	0.95[CEU][hapmap]
rs1774977	0.82[CEU][hapmap]
rs1980813	0.86[AMR][1000 genomes]
rs2437876	0.95[CEU][hapmap]
rs2477953	1.00[CEU][hapmap]
rs2477959	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2576155	0.86[AMR][1000 genomes]
rs2576162	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576163	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576173	1.00[CEU][hapmap]
rs2576177	1.00[CEU][hapmap]
rs2765451	0.94[CEU][hapmap]
rs2765453	0.95[CEU][hapmap]
rs2765457	1.00[CEU][hapmap]
rs792201	0.91[CEU][hapmap]
rs792231	0.86[CEU][hapmap]
rs875050	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90289000-90297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90292000-90297400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:90294800-90298000	Weak transcription	Liver	Liver
4	chr10:90296000-90299800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:90296200-90297200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:90296200-90297200	Weak transcription	Fetal Kidney	kidney
7	chr10:90296200-90298200	Enhancers	Fetal Lung	lung
8	chr10:90296400-90297600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:90296400-90298800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:90296400-90302400	Enhancers	HSMMtube	muscle
11	chr10:90296600-90301800	Enhancers	HSMM	muscle
12	chr10:90296600-90302000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:90296600-90309200	Weak transcription	Psoas Muscle	Psoas
14	chr10:90296800-90298400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:90297000-90297600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:90297000-90298200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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