Variant report

Variant	rs1325899
Chromosome Location	chr10:90317327-90317328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10509547	0.90[CEU][hapmap]
rs10509548	0.90[CEU][hapmap]
rs10509549	0.90[CEU][hapmap]
rs10509550	0.90[CEU][hapmap]
rs10736359	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10736360	0.82[CEU][hapmap]
rs11816967	0.90[CEU][hapmap]
rs1325901	0.85[CEU][hapmap]
rs1325904	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1342457	0.95[CEU][hapmap]
rs1359581	0.94[CEU][hapmap]
rs1359582	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1409133	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1409136	0.81[CEU][hapmap]
rs1555839	0.85[CEU][hapmap]
rs1573074	0.90[CEU][hapmap]
rs17109303	1.00[CHB][hapmap]
rs17109402	1.00[CHB][hapmap]
rs17109478	1.00[CHB][hapmap]
rs17109533	1.00[CHB][hapmap]
rs17109590	1.00[CHB][hapmap]
rs17109630	1.00[CHB][hapmap]
rs17109857	1.00[CHB][hapmap]
rs17109867	1.00[CHB][hapmap]
rs17336288	0.90[CEU][hapmap]
rs17426488	0.90[CEU][hapmap]
rs1980813	0.81[CEU][hapmap]
rs2437876	0.90[CEU][hapmap]
rs2477953	0.95[CEU][hapmap]
rs2477959	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2576155	0.81[CEU][hapmap]
rs2576158	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2576162	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2576163	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2576167	0.81[CEU][hapmap]
rs2576173	0.95[CEU][hapmap]
rs2576177	0.95[CEU][hapmap]
rs2765451	0.88[CEU][hapmap]
rs2765453	1.00[CEU][hapmap]
rs2765457	0.95[CEU][hapmap]
rs2861367	1.00[CHB][hapmap];0.82[AFR][1000 genomes]
rs4584493	1.00[CHB][hapmap]
rs58463359	0.82[AFR][1000 genomes]
rs74147230	0.82[AFR][1000 genomes]
rs792201	0.90[CEU][hapmap]
rs792231	0.85[CEU][hapmap]
rs875050	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90312200-90342400	Weak transcription	Ovary	ovary
2	chr10:90315200-90318600	Enhancers	Hela-S3	cervix
3	chr10:90315400-90322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:90315400-90342400	Weak transcription	Aorta	Aorta
5	chr10:90316400-90318200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:90316600-90317400	Enhancers	Osteobl	bone
7	chr10:90316800-90318000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90316800-90318200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:90316800-90318400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90317000-90318400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:90317000-90318400	Enhancers	NHDF-Ad	bronchial
12	chr10:90317200-90317600	Enhancers	NH-A	brain
13	chr10:90317200-90317800	Enhancers	Adipose Nuclei	Adipose
14	chr10:90317200-90318000	Enhancers	NHLF	lung

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