Variant report

Variant	rs2576173
Chromosome Location	chr10:90252724-90252725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10509547	0.95[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509548	0.95[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509549	0.95[CEU][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10509550	0.95[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10736359	1.00[CEU][hapmap]
rs1169042	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11816967	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1325899	0.95[CEU][hapmap]
rs1325901	0.90[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1325904	1.00[CEU][hapmap]
rs1342457	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1359581	0.94[CEU][hapmap]
rs1359582	0.95[CEU][hapmap]
rs1555839	0.80[CEU][hapmap]
rs1573074	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17334741	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs17336288	0.95[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17426488	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1774977	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs1974053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2437876	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs2477953	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2576158	1.00[CEU][hapmap]
rs2576162	0.95[CEU][hapmap]
rs2576163	0.95[CEU][hapmap]
rs2576175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2576177	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2765451	0.94[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2765453	0.95[CEU][hapmap]
rs2765457	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57260181	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs792201	0.90[CEU][hapmap];0.89[AMR][1000 genomes]
rs792202	0.89[AMR][1000 genomes]
rs792203	0.89[AMR][1000 genomes]
rs792231	0.86[CEU][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90249400-90253400	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:90249600-90253400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:90250200-90253200	Weak transcription	Fetal Lung	lung
4	chr10:90251000-90253200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:90251200-90253400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:90251200-90253600	Weak transcription	Liver	Liver
7	chr10:90251200-90258800	Weak transcription	Fetal Thymus	thymus
8	chr10:90251600-90254400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:90251800-90253400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:90251800-90253600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:90251800-90253600	Weak transcription	Primary B cells from cord blood	blood
12	chr10:90252000-90253400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:90252000-90253600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:90252000-90253800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:90252600-90254400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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