Variant report

Variant	rs2576175
Chromosome Location	chr10:90249994-90249995
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90249239..90251953-chr13:73810044..73812840,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509547	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509548	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509549	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509550	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1169042	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11816967	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1325901	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1342457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1573074	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17334741	0.87[AMR][1000 genomes]
rs17336288	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17426488	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1774977	0.87[AMR][1000 genomes]
rs1974053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2477953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2576173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2765451	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2765457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57260181	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs792201	0.89[AMR][1000 genomes]
rs792202	0.89[AMR][1000 genomes]
rs792203	0.89[AMR][1000 genomes]
rs792231	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90248800-90251400	Enhancers	Primary T cells from cord blood	blood
2	chr10:90249000-90251000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:90249200-90251400	Enhancers	Dnd41	blood
4	chr10:90249200-90251800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:90249200-90252600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:90249400-90253400	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:90249600-90250000	Weak transcription	Fetal Lung	lung
8	chr10:90249600-90250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:90249600-90250800	Weak transcription	Right Atrium	heart
10	chr10:90249600-90251200	Enhancers	Liver	Liver
11	chr10:90249600-90253400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:90249800-90250200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:90249800-90250800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:90249800-90250800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:90249800-90251800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:90249800-90252000	Enhancers	Primary hematopoietic stem cells	blood

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