Variant report

Variant	rs2765453
Chromosome Location	chr10:90302293-90302294
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509547	0.91[CEU][hapmap]
rs10509548	0.90[CEU][hapmap]
rs10509549	0.90[CEU][hapmap]
rs10509550	0.90[CEU][hapmap]
rs10736359	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10736360	0.82[CEU][hapmap]
rs11816967	0.86[CEU][hapmap]
rs1325899	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1325901	0.86[CEU][hapmap]
rs1325904	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1342457	0.95[CEU][hapmap]
rs1359581	0.94[CEU][hapmap];0.88[AMR][1000 genomes]
rs1359582	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409133	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409136	0.82[CEU][hapmap];0.92[AMR][1000 genomes]
rs1555839	0.85[CEU][hapmap]
rs1573074	0.90[CEU][hapmap]
rs17334741	0.87[AFR][1000 genomes]
rs17336288	0.90[CEU][hapmap]
rs17426488	0.91[CEU][hapmap]
rs1980813	0.82[CEU][hapmap];0.92[AMR][1000 genomes]
rs2437876	0.90[CEU][hapmap]
rs2477953	0.95[CEU][hapmap]
rs2477959	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576155	0.82[CEU][hapmap];0.92[AMR][1000 genomes]
rs2576158	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576162	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576163	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576167	0.82[CEU][hapmap]
rs2576173	0.95[CEU][hapmap]
rs2576177	0.95[CEU][hapmap]
rs2765451	0.88[CEU][hapmap]
rs2765457	0.95[CEU][hapmap]
rs792201	0.86[CEU][hapmap];0.87[AFR][1000 genomes]
rs792202	0.87[AFR][1000 genomes]
rs792203	0.87[AFR][1000 genomes]
rs792231	0.81[CEU][hapmap];0.87[AFR][1000 genomes]
rs875050	0.82[CEU][hapmap];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90296400-90302400	Enhancers	HSMMtube	muscle
2	chr10:90296600-90309200	Weak transcription	Psoas Muscle	Psoas
3	chr10:90299200-90302400	Enhancers	Hela-S3	cervix
4	chr10:90300800-90302400	Enhancers	Adipose Nuclei	Adipose
5	chr10:90301000-90302400	Enhancers	Liver	Liver
6	chr10:90301000-90303000	Enhancers	Fetal Lung	lung
7	chr10:90301400-90302800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:90301600-90302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:90301600-90302600	Enhancers	Esophagus	oesophagus
10	chr10:90301600-90303200	Enhancers	Left Ventricle	heart
11	chr10:90301800-90302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:90301800-90302800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:90301800-90306800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:90302000-90303000	Enhancers	Right Atrium	heart
15	chr10:90302000-90303800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:90302200-90302400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:90302200-90302600	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links