Variant report

Variant rs2590125
Chromosome Location chr1:144989739-144989740
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144983000-144997600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:144983200-144992000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr1:144983400-144991800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:144983400-144991800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:144983400-144994000 Weak transcription H1 Cell Line embryonic stem cell
6 chr1:144983400-144994200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:144983400-144994200 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr1:144983800-144991800 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr1:144985800-144993400 Enhancers Pancreatic Islets Pancreatic Islet
10 chr1:144987000-144993000 Weak transcription Lung lung
11 chr1:144987000-144994400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:144987800-144990400 Enhancers Small Intestine intestine
13 chr1:144987800-144991000 Enhancers Primary monocytes fromperipheralblood blood
14 chr1:144987800-144991200 Enhancers Brain Hippocampus Middle brain
15 chr1:144987800-144991800 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:144988000-144989800 Genic enhancers Brain Inferior Temporal Lobe brain
17 chr1:144988000-144989800 Transcr. at gene 5' and 3' Fetal Heart heart
18 chr1:144988000-144991000 Enhancers Brain Substantia Nigra brain
19 chr1:144988000-144996400 Genic enhancers Brain Germinal Matrix brain
20 chr1:144988200-144990000 Enhancers Sigmoid Colon Sigmoid Colon
21 chr1:144988400-144990400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:144988400-144990400 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr1:144988600-144990600 Flanking Active TSS HSMMtube muscle
24 chr1:144988600-144991600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
25 chr1:144988600-144991800 Weak transcription Primary T cells from cord blood blood
26 chr1:144988800-144989800 Genic enhancers Brain Angular Gyrus brain
27 chr1:144988800-144989800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
28 chr1:144988800-144989800 Flanking Active TSS Rectal Smooth Muscle rectum
29 chr1:144988800-144990000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:144988800-144990000 Flanking Active TSS Muscle Satellite Cultured Cells --
31 chr1:144988800-144990000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:144988800-144990000 Flanking Active TSS Liver Liver
33 chr1:144988800-144990000 Flanking Active TSS Duodenum Mucosa Duodenum
34 chr1:144988800-144990000 Flanking Active TSS Psoas Muscle Psoas
35 chr1:144988800-144990200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
36 chr1:144988800-144990400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:144988800-144990400 Enhancers Primary hematopoietic stem cells short term culture blood
38 chr1:144988800-144990400 Enhancers Placenta Placenta
39 chr1:144988800-144991800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:144989000-144989800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
41 chr1:144989000-144990000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:144989000-144990000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:144989000-144990000 Enhancers Cortex derived primary cultured neurospheres brain
44 chr1:144989000-144990000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:144989000-144990000 Flanking Active TSS Aorta Aorta
46 chr1:144989000-144990000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
47 chr1:144989000-144990000 Enhancers Fetal Lung lung
48 chr1:144989000-144990000 Enhancers A549 lung
49 chr1:144989000-144990000 Enhancers Hela-S3 cervix
50 chr1:144989000-144990000 Enhancers NHEK skin

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