Variant report

Variant rs1627675
Chromosome Location chr1:145033984-145033985
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:145023800-145034000 Weak transcription Pancreas Pancrea
2 chr1:145027600-145037200 Genic enhancers HSMM muscle
3 chr1:145028600-145038000 Enhancers Brain Angular Gyrus brain
4 chr1:145029000-145034200 Enhancers Brain Substantia Nigra brain
5 chr1:145029200-145035400 Enhancers Brain Inferior Temporal Lobe brain
6 chr1:145030200-145038200 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:145031000-145034000 Weak transcription Small Intestine intestine
8 chr1:145031200-145034000 Enhancers Skeletal Muscle Male skeletal muscle
9 chr1:145031400-145034600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:145031600-145034200 Enhancers Fetal Heart heart
11 chr1:145031800-145034400 Enhancers HMEC breast
12 chr1:145032000-145034200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:145032000-145034400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:145032000-145034600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:145032000-145035200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:145032200-145034000 Enhancers Duodenum Smooth Muscle Duodenum
17 chr1:145032200-145034200 Enhancers Rectal Smooth Muscle rectum
18 chr1:145032200-145035000 Enhancers Brain Hippocampus Middle brain
19 chr1:145032200-145035000 Enhancers K562 blood
20 chr1:145032400-145034000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:145032600-145037600 Flanking Active TSS Brain Germinal Matrix brain
22 chr1:145033000-145034000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr1:145033000-145034000 Enhancers Skeletal Muscle Female skeletal muscle
24 chr1:145033000-145034200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:145033000-145034200 Enhancers NH-A brain
26 chr1:145033000-145037600 Weak transcription Placenta Placenta
27 chr1:145033200-145034000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:145033200-145034000 Enhancers Aorta Aorta
29 chr1:145033200-145034000 Enhancers Brain Cingulate Gyrus brain
30 chr1:145033200-145034000 Weak transcription Left Ventricle heart
31 chr1:145033200-145034000 Weak transcription Right Ventricle heart
32 chr1:145033200-145034200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:145033200-145034200 Enhancers Stomach Smooth Muscle stomach
34 chr1:145033200-145034800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
35 chr1:145033200-145034800 Weak transcription Fetal Muscle Leg muscle
36 chr1:145033200-145035000 Weak transcription Right Atrium heart
37 chr1:145033200-145036800 Weak transcription Adipose Nuclei Adipose
38 chr1:145033400-145034200 Enhancers Brain Anterior Caudate brain
39 chr1:145033400-145034800 Enhancers NHDF-Ad bronchial
40 chr1:145033600-145034000 Weak transcription Fetal Brain Female brain
41 chr1:145033600-145034000 Flanking Active TSS Pancreatic Islets Pancreatic Islet
42 chr1:145033600-145034200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:145033600-145034800 Weak transcription Fetal Brain Male brain
44 chr1:145033600-145034800 Genic enhancers HSMMtube muscle
45 chr1:145033600-145038400 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:145033800-145034000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:145033800-145034000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:145033800-145034200 Enhancers Liver Liver
49 chr1:145033800-145034200 Flanking Active TSS Osteobl bone
50 chr1:145033800-145034400 Genic enhancers NHLF lung

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