Variant report

Variant	rs1539655
Chromosome Location	chr1:144996670-144996671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr1:144994880-144996810	K562	blood:	n/a	chr1:144995278-144995293 chr1:144995278-144995293
2	ZNF143	chr1:144994278-144996777	K562	blood:	n/a	n/a
3	CTCF	chr1:144994276-144996763	K562	blood:	n/a	chr1:144996519-144996532
4	SMARCA4	chr1:144994418-144999273	K562	blood:	n/a	n/a
5	TEAD4	chr1:144987135-144996832	K562	blood:	n/a	n/a
6	CBX3	chr1:144991338-144996915	K562	blood:	n/a	n/a
7	PML	chr1:144991421-144996723	K562	blood:	n/a	chr1:144996450-144996458
8	ZNF274	chr1:144994806-144996868	K562	blood:	n/a	n/a
9	MYC	chr1:144994037-144996709	K562	blood:	n/a	chr1:144994556-144994566
10	ARID3A	chr1:144994237-144996744	K562	blood:	n/a	n/a
11	FAM48A	chr1:144995520-144996833	GM12878	blood:	n/a	n/a
12	CUX1	chr1:144994352-144996791	K562	blood:	n/a	n/a
13	MAFK	chr1:144994301-144996752	K562	blood:	n/a	chr1:144994828-144994842 chr1:144994936-144994951
14	IRF1	chr1:144994007-144996704	K562	blood:	n/a	chr1:144994214-144994228 chr1:144994938-144994952 chr1:144994940-144994953 chr1:144995102-144995116 chr1:144995942-144995955
15	TBL1XR1	chr1:144992486-144996721	K562	blood:	n/a	n/a
16	CCNT2	chr1:144996355-144996671	K562	blood:	n/a	n/a
17	EP300	chr1:144992503-144996717	K562	blood:	n/a	chr1:144993411-144993421 chr1:144993323-144993337 chr1:144995816-144995825
18	MXI1	chr1:144994331-144996778	K562	blood:	n/a	n/a
19	STAT5A	chr1:144993882-144996909	K562	blood:	n/a	chr1:144996666-144996680 chr1:144995196-144995208 chr1:144995128-144995137 chr1:144994219-144994231 chr1:144996654-144996677 chr1:144994213-144994225 chr1:144994941-144994952 chr1:144995129-144995138
20	NR2F2	chr1:144988877-145001064	K562	blood:	n/a	chr1:144989283-144989298
21	ZNF384	chr1:144991049-144996922	K562	blood:	n/a	n/a
22	IRF1	chr1:144992454-144996840	K562	blood:	n/a	chr1:144994214-144994228 chr1:144994938-144994952 chr1:144994940-144994953 chr1:144995102-144995116 chr1:144995942-144995955
23	JUND	chr1:144993933-144996674	K562	blood:	n/a	chr1:144994918-144994929 chr1:144996066-144996074
24	ZC3H11A	chr1:144994099-144996746	K562	blood:	n/a	n/a
25	EP300	chr1:144994414-144996844	K562	blood:	n/a	chr1:144995816-144995825
26	NRF1	chr1:144995111-144996771	K562	blood:	n/a	n/a
27	JUN	chr1:144994143-144996780	K562	blood:	n/a	chr1:144994918-144994929 chr1:144996066-144996074

No.	Distal block	Cell Line	Cell type
1	chr1:144530771..144535863-chr1:144988447..145007040,21	K562	blood:
2	chr1:144996607..145000491-chr1:145382842..145385780,3	K562	blood:
3	chr1:144946789..144948627-chr1:144995983..144997975,2	K562	blood:
4	chr1:144532285..144535839-chr1:144994993..144998864,6	K562	blood:
5	chr1:144995215..144996797-chr1:147999077..148000694,2	MCF-7	breast:
6	chr1:144995840..144996760-chr1:145055377..145055895,2	K562	blood:
7	chr1:144993668..144997286-chr1:145038559..145041171,3	MCF-7	breast:
8	chr1:144930785..144934494-chr1:144995135..144999319,4	MCF-7	breast:
9	chr1:144995928..144998719-chr1:145383813..145386385,2	K562	blood:

Variant related genes	Relation type
PDE4DIP	TF binding region
ENSG00000223491	Chromatin interaction
ENSG00000178104	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10910730	1.00[YRI][hapmap]
rs1557243	1.00[YRI][hapmap]
rs1621108	1.00[YRI][hapmap]
rs1625512	1.00[YRI][hapmap]
rs1627675	1.00[YRI][hapmap]
rs1778121	1.00[YRI][hapmap]
rs1778142	1.00[YRI][hapmap]
rs1778568	1.00[YRI][hapmap]
rs1778613	1.00[YRI][hapmap]
rs1778660	1.00[YRI][hapmap]
rs1778759	1.00[YRI][hapmap]
rs2489083	1.00[YRI][hapmap]
rs2590092	1.00[YRI][hapmap]
rs2653711	1.00[YRI][hapmap]
rs2762723	1.00[YRI][hapmap]
rs2762736	1.00[YRI][hapmap]
rs2762863	1.00[YRI][hapmap]
rs2762879	1.00[YRI][hapmap]
rs2798894	1.00[YRI][hapmap]
rs2798895	1.00[YRI][hapmap]
rs2798904	1.00[YRI][hapmap]
rs719603	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:109 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
3	esv1830469	chr1:144679113-145320996	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv872212	chr1:144850451-145073750	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv872213	chr1:144865454-145033984	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1005230	chr1:144865627-145151820	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	esv1828244	chr1:144865627-145243316	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
8	nsv469838	chr1:144869935-145009137	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
9	nsv482650	chr1:144869935-145009137	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv471603	chr1:144869936-145009137	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	esv2753760	chr1:144873327-145041016	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	esv2753260	chr1:144873327-145129144	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
13	nsv872214	chr1:144875799-145195645	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
14	nsv821620	chr1:144885908-145095806	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
15	esv2753261	chr1:144889465-145041016	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
16	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
17	nsv872216	chr1:144894697-145041251	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
18	esv1824264	chr1:144902232-145098718	Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
19	esv1828303	chr1:144902232-145098718	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
20	esv1831542	chr1:144902232-145098718	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
21	esv1843292	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
22	esv1850612	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
23	esv1819879	chr1:144902232-145287810	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
24	esv1822839	chr1:144902232-145393578	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
25	esv1826561	chr1:144902232-145393578	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
26	esv1849727	chr1:144902232-145393578	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
27	nsv870419	chr1:144912330-145113174	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
28	nsv1014405	chr1:144914802-145041053	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
29	nsv1013214	chr1:144914802-145069306	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
30	nsv821349	chr1:144916753-145090362	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
31	nsv824365	chr1:144916753-145090362	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
32	esv1818887	chr1:144919989-145074925	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
33	esv32934	chr1:144920018-145079815	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
34	esv3387252	chr1:144922395-145093993	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
35	esv1814765	chr1:144923014-145074925	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
36	esv1820235	chr1:144923014-145087821	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
37	esv1805522	chr1:144938320-145104261	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
38	esv1846928	chr1:144938320-145104261	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
39	esv1815206	chr1:144940095-145082961	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
40	esv1815389	chr1:144940855-145080948	Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
41	esv1846259	chr1:144941990-145083949	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
42	esv1830107	chr1:144942423-145074925	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
43	esv1850767	chr1:144942423-145074925	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
44	esv1826390	chr1:144943140-145085418	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
45	esv2762189	chr1:144945737-145014990	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
46	esv1815951	chr1:144948280-145078168	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
47	esv1845217	chr1:144948280-145078168	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
48	esv1826769	chr1:144948280-145088893	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
49	esv19656	chr1:144948283-145083994	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
50	nsv8069	chr1:144948383-145081051	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:144983000-144997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:144990000-144998800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:144990600-144998600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:144991400-145004200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:144991600-145002000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:144991800-144999400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:144992000-144997600	Weak transcription	Primary T cells from cord blood	blood
8	chr1:144992000-145002400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:144992200-144997600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:144992600-145007800	Weak transcription	HMEC	breast
11	chr1:144993200-144997800	Weak transcription	Liver	Liver
12	chr1:144993800-145002400	Strong transcription	Osteobl	bone
13	chr1:144994400-144998400	Flanking Active TSS	K562	blood
14	chr1:144994600-144997600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:144994800-144997200	Weak transcription	NHDF-Ad	bronchial
16	chr1:144995000-144997600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:144995000-144997600	Weak transcription	Fetal Brain Male	brain
18	chr1:144995000-144998800	Weak transcription	Esophagus	oesophagus
19	chr1:144995000-144999000	Weak transcription	Gastric	stomach
20	chr1:144995000-145005600	Weak transcription	NH-A	brain
21	chr1:144995200-144997600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:144995200-144997800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:144995200-144998800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:144995200-145000000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:144995200-145000000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:144995400-144996800	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr1:144995400-144997600	Weak transcription	Brain Substantia Nigra	brain
28	chr1:144995400-144997600	Weak transcription	Stomach Mucosa	stomach
29	chr1:144995400-144998800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:144995600-144997200	Enhancers	Fetal Muscle Leg	muscle
31	chr1:144995600-144998800	Weak transcription	Right Atrium	heart
32	chr1:144995600-144999000	Enhancers	Psoas Muscle	Psoas
33	chr1:144995800-144997400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:144995800-144997400	Enhancers	Left Ventricle	heart
35	chr1:144995800-144997600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:144995800-144997600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:144995800-144997600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:144995800-144997600	Weak transcription	Brain Anterior Caudate	brain
39	chr1:144995800-144997600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr1:144995800-144997600	Weak transcription	Brain Hippocampus Middle	brain
41	chr1:144995800-144997600	Weak transcription	Spleen	Spleen
42	chr1:144995800-144997800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:144995800-144997800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:144995800-144997800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:144995800-144997800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:144995800-144998800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:144995800-144998800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:144995800-144998800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:144995800-144998800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:144995800-144998800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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