Variant report

Variant rs1630994
Chromosome Location chr1:145006980-145006981
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144992600-145007800 Weak transcription HMEC breast
2 chr1:144995800-145008600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:144996600-145008600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:144997400-145007800 Weak transcription NHEK skin
5 chr1:144998000-145009000 Weak transcription Stomach Mucosa stomach
6 chr1:144999200-145008600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:145000400-145008400 Genic enhancers Muscle Satellite Cultured Cells --
8 chr1:145000400-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:145000600-145008000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:145000800-145009000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:145000800-145009000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:145000800-145021600 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:145001000-145008000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:145001000-145009000 Weak transcription Primary hematopoietic stem cells blood
15 chr1:145001400-145008400 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr1:145001600-145008400 Weak transcription Primary B cells from cord blood blood
17 chr1:145002800-145012000 Weak transcription Pancreas Pancrea
18 chr1:145002800-145024200 Weak transcription Gastric stomach
19 chr1:145004000-145014800 Strong transcription Placenta Placenta
20 chr1:145004200-145007000 Strong transcription Stomach Smooth Muscle stomach
21 chr1:145004400-145007600 Strong transcription Brain Germinal Matrix brain
22 chr1:145004600-145008000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:145004600-145009200 Weak transcription Colon Smooth Muscle Colon
24 chr1:145004600-145016200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:145004800-145007000 Enhancers K562 blood
26 chr1:145004800-145007000 Genic enhancers NHLF lung
27 chr1:145004800-145008600 Weak transcription Ovary ovary
28 chr1:145004800-145009400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:145004800-145009600 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:145005000-145008600 Weak transcription Right Atrium heart
31 chr1:145005000-145010200 Weak transcription Lung lung
32 chr1:145005400-145014800 Weak transcription Fetal Intestine Small intestine
33 chr1:145005600-145009600 Weak transcription Psoas Muscle Psoas
34 chr1:145005800-145008600 Weak transcription Fetal Stomach stomach
35 chr1:145006000-145007000 Enhancers ES-I3 Cell Line embryonic stem cell
36 chr1:145006000-145007000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:145006000-145007000 Enhancers HUES48 Cell Line embryonic stem cell
38 chr1:145006000-145007000 Genic enhancers Brain Inferior Temporal Lobe brain
39 chr1:145006000-145008000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:145006000-145009000 Genic enhancers HSMM muscle
41 chr1:145006200-145007000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:145006200-145007000 Genic enhancers Skeletal Muscle Female skeletal muscle
43 chr1:145006200-145008200 Genic enhancers NHDF-Ad bronchial
44 chr1:145006200-145009400 Weak transcription Liver Liver
45 chr1:145006200-145012200 Weak transcription Fetal Brain Female brain
46 chr1:145006400-145007000 Enhancers Fetal Heart heart
47 chr1:145006400-145007000 Enhancers Pancreatic Islets Pancreatic Islet
48 chr1:145006400-145007400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:145006400-145007800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr1:145006400-145007800 Weak transcription Brain Substantia Nigra brain

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