Variant report

Variant rs1778601
Chromosome Location chr1:144994254-144994255
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144983000-144997600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:144987000-144994400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:144988000-144996400 Genic enhancers Brain Germinal Matrix brain
4 chr1:144989800-144995400 Active TSS Left Ventricle heart
5 chr1:144990000-144994600 Weak transcription NH-A brain
6 chr1:144990000-144998800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:144990600-144996200 Genic enhancers Muscle Satellite Cultured Cells --
8 chr1:144990600-144996400 Weak transcription Primary B cells from cord blood blood
9 chr1:144990600-144998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:144990800-144994600 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:144991000-144994800 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
12 chr1:144991200-144995200 Enhancers Pancreas Pancrea
13 chr1:144991400-144994600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:144991400-145004200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr1:144991600-145002000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:144991800-144994400 Enhancers H9 Cell Line embryonic stem cell
17 chr1:144991800-144994400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:144991800-144995600 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
19 chr1:144991800-144999400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:144992000-144994800 Strong transcription Cortex derived primary cultured neurospheres brain
21 chr1:144992000-144994800 Strong transcription NHDF-Ad bronchial
22 chr1:144992000-144997600 Weak transcription Primary T cells from cord blood blood
23 chr1:144992000-145002400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:144992200-144994800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:144992200-144995400 Active TSS Psoas Muscle Psoas
26 chr1:144992200-144997600 Weak transcription Colon Smooth Muscle Colon
27 chr1:144992400-144996200 Strong transcription Brain Angular Gyrus brain
28 chr1:144992600-144994400 Strong transcription Brain Substantia Nigra brain
29 chr1:144992600-144995000 Active TSS Primary T killer memory cells from peripheral blood blood
30 chr1:144992600-144995000 Flanking Active TSS Placenta Placenta
31 chr1:144992600-145007800 Weak transcription HMEC breast
32 chr1:144992800-144994400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:144993000-144994600 Enhancers Lung lung
34 chr1:144993200-144994400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:144993200-144994400 Strong transcription Brain Inferior Temporal Lobe brain
36 chr1:144993200-144994400 Active TSS Right Ventricle heart
37 chr1:144993200-144995400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:144993200-144996400 Strong transcription NHLF lung
39 chr1:144993200-144997800 Weak transcription Liver Liver
40 chr1:144993400-144994400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:144993400-144994400 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:144993400-144994400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:144993400-144994400 Weak transcription Aorta Aorta
44 chr1:144993400-144994400 Weak transcription Gastric stomach
45 chr1:144993400-144994400 Active TSS Right Atrium heart
46 chr1:144993400-144994400 Genic enhancers Stomach Smooth Muscle stomach
47 chr1:144993400-144995400 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr1:144993600-144994400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:144993600-144994400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:144993600-144994400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin

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