Variant report

Variant	rs2591464
Chromosome Location	chr5:180288455-180288456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr5:180288226-180288604	HL-60	blood:	n/a	chr5:180288502-180288515
2	POLR2A	chr5:180287709-180288525	HepG2	liver:	n/a	n/a
3	SIN3AK20	chr5:180288001-180288667	SK-N-SH	brain:	n/a	n/a
4	GABPA	chr5:180287757-180288838	A549	lung:	n/a	chr5:180288453-180288462
5	POLR2A	chr5:180287910-180288556	SK-N-SH	brain:	n/a	n/a
6	SIN3AK20	chr5:180288050-180288714	H1-hESC	embryonic stem cell:	n/a	n/a
7	FOXA1	chr5:180288212-180288669	HepG2	liver:	n/a	chr5:180288519-180288534
8	TAF1	chr5:180287463-180288856	A549	lung:	n/a	n/a
9	CTCF	chr5:180287514-180288524	K562	blood:	n/a	n/a
10	HEY1	chr5:180287666-180288877	K562	blood:	n/a	chr5:180288353-180288368
11	ZEB1	chr5:180287365-180288982	HepG2	liver:	n/a	n/a
12	POLR2A	chr5:180287356-180288934	HL-60	blood:	n/a	n/a
13	EGR1	chr5:180287836-180288953	MCF-7	breast:	n/a	chr5:180288589-180288598 chr5:180288090-180288103 chr5:180288306-180288315 chr5:180288831-180288844 chr5:180288453-180288463
14	MAX	chr5:180287384-180288826	HepG2	liver:	n/a	chr5:180288549-180288558 chr5:180288453-180288463 chr5:180288550-180288559 chr5:180288546-180288561 chr5:180288550-180288557 chr5:180288548-180288561 chr5:180288548-180288561
15	SPI1	chr5:180288001-180288725	HL-60	blood:	n/a	chr5:180288502-180288515
16	FOXA1	chr5:180288178-180288646	T-47D	breast:	n/a	chr5:180288519-180288534
17	TAF1	chr5:180287936-180289008	MCF-7	breast:	n/a	n/a
18	GABPA	chr5:180287893-180288795	SK-N-SH	brain:	n/a	chr5:180288453-180288462
19	POLR2A	chr5:180287273-180289036	SK-N-MC	brain:	n/a	n/a
20	CTCF	chr5:180288340-180288490	Caco-2	colon:	n/a	n/a
21	POLR2A	chr5:180287392-180289013	MCF-7	breast:	n/a	n/a
22	MYC	chr5:180287882-180288903	MCF-7	breast:	n/a	chr5:180288549-180288558 chr5:180288453-180288463 chr5:180288550-180288559 chr5:180288546-180288561 chr5:180288550-180288557 chr5:180288548-180288561 chr5:180288548-180288561
23	TEAD4	chr5:180288331-180288761	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr5:180288400-180288550	HUVEC	blood vessel:	n/a	n/a
25	MAX	chr5:180287348-180288996	K562	blood:	n/a	chr5:180288549-180288558 chr5:180288453-180288463 chr5:180288550-180288559 chr5:180288546-180288561 chr5:180288550-180288557 chr5:180288548-180288561 chr5:180288548-180288561
26	POLR2A	chr5:180287448-180288627	HepG2	liver:	n/a	n/a
27	SPI1	chr5:180288143-180288624	GM12891	blood:	n/a	chr5:180288502-180288515
28	YY1	chr5:180287525-180288859	GM12878	blood:	n/a	chr5:180288355-180288369 chr5:180288430-180288444
29	BCLAF1	chr5:180287997-180288590	K562	blood:	n/a	chr5:180288052-180288061
30	POLR2A	chr5:180287380-180288627	PFSK-1	brain:	n/a	n/a
31	USF1	chr5:180288319-180288647	A549	lung:	n/a	chr5:180288414-180288430 chr5:180288549-180288560
32	GABPA	chr5:180287439-180288870	A549	lung:	n/a	chr5:180288453-180288462
33	REST	chr5:180288075-180288501	K562	blood:	n/a	chr5:180288450-180288463
34	SP1	chr5:180288185-180288846	H1-hESC	embryonic stem cell:	n/a	chr5:180288501-180288510 chr5:180288501-180288511 chr5:180288453-180288462 chr5:180288452-180288464 chr5:180288497-180288511 chr5:180288502-180288511 chr5:180288453-180288463 chr5:180288500-180288512 chr5:180288453-180288463 chr5:180288829-180288843 chr5:180288368-180288382 chr5:180288500-180288511 chr5:180288454-180288463 chr5:180288452-180288464 chr5:180288500-180288512
35	POU2F2	chr5:180288339-180288550	GM12878	blood:	n/a	n/a
36	TCF12	chr5:180288232-180288790	H1-hESC	embryonic stem cell:	n/a	chr5:180288566-180288573
37	POLR2A	chr5:180287341-180288961	K562	blood:	n/a	n/a
38	TAF1	chr5:180287665-180289041	ECC-1	luminal epithelium:	n/a	n/a
39	SP2	chr5:180288014-180288554	HepG2	liver:	n/a	n/a
40	USF1	chr5:180288142-180288706	K562	blood:	n/a	chr5:180288414-180288430 chr5:180288549-180288560
41	NR3C1	chr5:180288294-180288735	ECC-1	luminal epithelium:	n/a	n/a
42	POLR2A	chr5:180287395-180288961	ECC-1	luminal epithelium:	n/a	n/a
43	BCL3	chr5:180287597-180288561	A549	lung:	n/a	chr5:180288052-180288061 chr5:180287721-180287730
44	GABPA	chr5:180287731-180288872	HL-60	blood:	n/a	chr5:180288453-180288462
45	TCF12	chr5:180288196-180288831	MCF-7	breast:	n/a	chr5:180288566-180288573
46	REST	chr5:180287531-180288627	A549	lung:	n/a	chr5:180288498-180288511 chr5:180288450-180288463
47	ETS1	chr5:180287914-180288583	K562	blood:	n/a	chr5:180288306-180288315 chr5:180288499-180288510 chr5:180288304-180288314 chr5:180288304-180288315
48	POLR2A	chr5:180287410-180288758	PANC-1	pancreas:	n/a	n/a
49	EP300	chr5:180288054-180288766	H1-hESC	embryonic stem cell:	n/a	chr5:180288360-180288369 chr5:180288289-180288298 chr5:180288590-180288597 chr5:180288413-180288429
50	MAX	chr5:180287875-180288909	H1-hESC	embryonic stem cell:	n/a	chr5:180288549-180288558 chr5:180288453-180288463 chr5:180288550-180288559 chr5:180288546-180288561 chr5:180288550-180288557 chr5:180288548-180288561 chr5:180288548-180288561

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:180288429-180288479	NT2-D1	testis:	n/a
2	chr5:180288429-180288479	LNCaP	prostate:	n/a
3	chr5:180288429-180288479	AG04450	lung:	fetal
4	chr5:180288429-180288479	HIPEpiC	eye:	n/a
5	chr5:180288429-180288479	AG04449	skin:	fetal
6	chr5:180288429-180288479	NH-A	brain:	n/a
7	chr5:180288429-180288479	AoSMC	blood vessel:	n/a
8	chr5:180288429-180288479	SK-N-SH	brain:	n/a
9	chr5:180288429-180288479	Jurkat	blood:	n/a
10	chr5:180288429-180288479	GM06990	blood:	n/a
11	chr5:180288429-180288479	Hepatocyte	liver:	n/a
12	chr5:180288429-180288479	SAEC	small airway:	n/a
13	chr5:180288429-180288479	GM12891	blood:	n/a
14	chr5:180288429-180288479	SK-N-SH_RA	brain:	n/a
15	chr5:180288429-180288479	HCF	heart:	n/a
16	chr5:180288429-180288479	HUVEC	blood vessel:	n/a
17	chr5:180288429-180288479	HEEpiC	esophagus:	n/a
18	chr5:180288429-180288479	HCM	heart:	n/a
19	chr5:180288429-180288479	MCF10A-Er-Src	breast:	n/a
20	chr5:180288429-180288479	SK-N-MC	brain:	n/a
21	chr5:180288429-180288479	HCPEpiC	choroid plexus:	n/a
22	chr5:180288429-180288479	HRE	kidney:	n/a
23	chr5:180288429-180288479	HPAEpiC	pulmonary alveolar:	n/a
24	chr5:180288429-180288479	PrEC	prostate:	n/a
25	chr5:180288429-180288479	RPTEC	kidney:	n/a
26	chr5:180288429-180288479	Caco-2	colon:	n/a
27	chr5:180288429-180288479	GM19239	blood:	n/a
28	chr5:180288429-180288479	Hela-S3	cervix:	n/a
29	chr5:180288429-180288479	AG09309	skin:	n/a
30	chr5:180288429-180288479	BJ	skin:	n/a
31	chr5:180288429-180288479	BE2_C	brain:	n/a
32	chr5:180288429-180288479	CMK	blood:	n/a
33	chr5:180288429-180288479	PANC-1	pancreas:	n/a
34	chr5:180288429-180288479	PFSK-1	brain:	n/a
35	chr5:180288429-180288479	HRCEpiC	kidney:	n/a
36	chr5:180288429-180288479	IMR90	lung:	fetal
37	chr5:180288429-180288479	AG09319	gingival:	n/a
38	chr5:180288429-180288479	K562	blood:	n/a
39	chr5:180288429-180288479	NB4	blood:	n/a
40	chr5:180288429-180288479	HNPCEpiC	eye:	n/a
41	chr5:180288429-180288479	HepG2	liver:	n/a
42	chr5:180288429-180288479	HCT-116	colon:	n/a
43	chr5:180288429-180288479	HL-60	blood:	n/a
44	chr5:180288429-180288479	ECC-1	luminal epithelium:	n/a
45	chr5:180288429-180288479	A549	lung:	n/a
46	chr5:180288429-180288479	HEK293	kidney:	embryo
47	chr5:180288429-180288479	ovcar-3	ovarian:	n/a
48	chr5:180288429-180288479	T-47D	breast:	n/a
49	chr5:180288429-180288479	SKMC	muscle:	n/a
50	chr5:180288429-180288479	MCF-7	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:79825577..79828319-chr5:180288108..180290016,2	MCF-7	breast:
2	chr5:180228090..180233792-chr5:180285929..180290144,13	MCF-7	breast:
3	chr5:180234090..180241537-chr5:180284888..180291277,19	K562	blood:
4	chr5:180287893..180289951-chr5:180479708..180482492,2	K562	blood:
5	chr5:180288412..180290670-chr5:180581214..180583191,2	MCF-7	breast:
6	chr5:180228019..180233439-chr5:180285963..180289843,10	MCF-7	breast:
7	chr17:57916939..57918773-chr5:180288186..180290216,2	MCF-7	breast:
8	chr5:180256399..180259891-chr5:180287425..180289762,3	K562	blood:
9	chr1:45240723..45241532-chr5:180288059..180288632,2	Hela-S3	cervix:
10	chr5:180286717..180289851-chr5:180668647..180672351,4	MCF-7	breast:
11	chr5:180256272..180261271-chr5:180284313..180290761,15	MCF-7	breast:
12	chr5:180288449..180290237-chr5:180454877..180456790,2	K562	blood:
13	chr12:53294842..53296821-chr5:180286153..180288679,2	MCF-7	breast:
14	chr5:180235849..180243122-chr5:180284007..180290583,16	MCF-7	breast:
15	chr5:180287191..180290968-chr5:180649202..180652395,5	MCF-7	breast:
16	chr5:180276415..180280791-chr5:180286128..180289420,6	K562	blood:
17	chr5:180235718..180243084-chr5:180284888..180290652,13	K562	blood:
18	chr5:180254080..180259696-chr5:180286312..180289720,8	MCF-7	breast:
19	chr5:180285636..180289951-chr5:180479678..180484106,8	K562	blood:
20	chr5:180227376..180231453-chr5:180286019..180289801,4	K562	blood:
21	chr5:180227414..180232885-chr5:180286019..180290085,8	K562	blood:
22	chr5:180287376..180288975-chr5:180649286..180651588,3	MCF-7	breast:
23	chr5:180235539..180242527-chr5:180285126..180289932,26	MCF-7	breast:

Variant related genes	Relation type
ZFP62	TF binding region
ZFP62	CpG island
ENSG00000141522	Chromatin interaction
ENSG00000146063	Chromatin interaction
ENSG00000245060	Chromatin interaction
ENSG00000182613	Chromatin interaction
ENSG00000196670	Chromatin interaction
ENSG00000225721	Chromatin interaction
ENSG00000264549	Chromatin interaction
ENSG00000142937	Chromatin interaction
ENSG00000272296	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000204628	Chromatin interaction
ENSG00000262413	Chromatin interaction
ENSG00000165810	Chromatin interaction
ENSG00000131446	Chromatin interaction
ENSG00000264732	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10052755	0.86[ASN][1000 genomes]
rs168726	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965839	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2127376	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127378	0.86[EUR][1000 genomes]
rs249307	0.84[EUR][1000 genomes]
rs249309	0.84[EUR][1000 genomes]
rs249310	0.84[EUR][1000 genomes]
rs249313	0.84[EUR][1000 genomes]
rs249314	0.83[EUR][1000 genomes]
rs249315	0.84[EUR][1000 genomes]
rs249316	0.84[EUR][1000 genomes]
rs249317	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591463	0.85[EUR][1000 genomes]
rs2619753	0.91[EUR][1000 genomes]
rs2619754	0.92[EUR][1000 genomes]
rs2619755	0.86[EUR][1000 genomes]
rs2619756	0.86[EUR][1000 genomes]
rs2619758	0.86[EUR][1000 genomes]
rs2619759	0.86[EUR][1000 genomes]
rs2619761	0.86[EUR][1000 genomes]
rs2619762	0.86[EUR][1000 genomes]
rs2619763	0.86[EUR][1000 genomes]
rs2619765	0.84[EUR][1000 genomes]
rs2619766	0.85[EUR][1000 genomes]
rs29653	0.85[EUR][1000 genomes]
rs29655	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700761	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6601146	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6601147	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6601148	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs705441	0.85[EUR][1000 genomes]
rs73353029	0.86[ASN][1000 genomes]
rs7709390	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7724400	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs801802	0.84[EUR][1000 genomes]
rs810491	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
2	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
6	nsv1015152	chr5:180014800-180567614	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	nsv537987	chr5:180014800-180567614	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	nsv1034993	chr5:180059323-180686563	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
9	nsv534263	chr5:180063182-180696806	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	166 gene(s)	inside rSNPs	diseases
10	nsv1025669	chr5:180069992-180686563	Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
11	nsv537993	chr5:180119301-180686563	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	158 gene(s)	inside rSNPs	diseases
12	nsv1026978	chr5:180137823-180686563	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
13	nsv949443	chr5:180144688-180503368	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
14	nsv1032677	chr5:180151997-180686563	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
15	nsv469692	chr5:180185452-180360834	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
16	nsv482702	chr5:180185452-180360834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
17	nsv1022107	chr5:180203044-180686563	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
18	nsv1033854	chr5:180208441-180686563	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
19	nsv537995	chr5:180208441-180686563	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
20	nsv1033472	chr5:180208501-180575682	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
21	nsv537996	chr5:180208501-180575682	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
22	nsv469788	chr5:180210102-180403232	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
23	nsv482337	chr5:180210102-180403232	Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
24	nsv1018788	chr5:180216969-180686563	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
25	nsv1024379	chr5:180217029-180686563	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
26	nsv537997	chr5:180217029-180686563	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
27	nsv1032399	chr5:180229033-180429831	Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
28	nsv537998	chr5:180229033-180429831	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
29	nsv1027391	chr5:180229033-180447744	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
30	nsv1018245	chr5:180229033-180686563	Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
31	nsv537999	chr5:180229033-180686563	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
32	nsv428133	chr5:180232451-180786488	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
33	nsv1032922	chr5:180234136-180429831	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
34	nsv1027735	chr5:180234136-180447744	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
35	nsv538000	chr5:180234136-180447744	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
36	nsv1028360	chr5:180234136-180686563	Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	149 gene(s)	inside rSNPs	diseases
37	nsv1035134	chr5:180240674-180429831	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
38	nsv538001	chr5:180240674-180429831	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
39	nsv1033040	chr5:180240674-180686563	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
40	nsv538002	chr5:180240674-180686563	Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
41	nsv1029448	chr5:180242884-180429831	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
42	nsv538003	chr5:180242884-180429831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
43	nsv1015860	chr5:180242884-180447744	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
44	nsv1028885	chr5:180242884-180686563	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
45	nsv538004	chr5:180242884-180686563	Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
46	nsv1020386	chr5:180251695-180447744	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
47	nsv538005	chr5:180251695-180447744	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
48	nsv1034760	chr5:180251695-180686563	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
49	nsv820020	chr5:180260902-180432533	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
50	esv3343361	chr5:180261371-180406569	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:180286200-180288800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:180286800-180289200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr5:180286800-180289200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:180286800-180289400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr5:180287000-180289000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr5:180287000-180289000	Active TSS	Colonic Mucosa	Colon
7	chr5:180287000-180289000	Active TSS	Psoas Muscle	Psoas
8	chr5:180287000-180289200	Active TSS	H1 Cell Line	embryonic stem cell
9	chr5:180287000-180289200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:180287200-180288600	Active TSS	HepG2	liver
11	chr5:180287200-180288800	Active TSS	Muscle Satellite Cultured Cells	--
12	chr5:180287200-180288800	Active TSS	Fetal Brain Male	brain
13	chr5:180287200-180288800	Active TSS	Thymus	Thymus
14	chr5:180287200-180289000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr5:180287200-180289000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:180287200-180289000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:180287200-180289000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:180287200-180289000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:180287200-180289000	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr5:180287200-180289000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr5:180287200-180289000	Active TSS	Fetal Intestine Small	intestine
22	chr5:180287200-180289000	Active TSS	Fetal Kidney	kidney
23	chr5:180287200-180289000	Active TSS	Fetal Muscle Trunk	muscle
24	chr5:180287200-180289000	Active TSS	Right Atrium	heart
25	chr5:180287200-180289000	Active TSS	A549	lung
26	chr5:180287200-180289000	Active TSS	Hela-S3	cervix
27	chr5:180287200-180289000	Active TSS	NHLF	lung
28	chr5:180287200-180289200	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr5:180287200-180289200	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr5:180287200-180289200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:180287200-180289200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:180287200-180289200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:180287200-180289200	Active TSS	Duodenum Mucosa	Duodenum
34	chr5:180287200-180289200	Active TSS	GM12878-XiMat	blood
35	chr5:180287200-180289200	Active TSS	HMEC	breast
36	chr5:180287200-180289600	Active TSS	K562	blood
37	chr5:180287200-180289800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr5:180287400-180288800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:180287400-180288800	Active TSS	Gastric	stomach
40	chr5:180287400-180288800	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr5:180287400-180289000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr5:180287400-180289000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:180287400-180289000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:180287400-180289000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:180287400-180289000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:180287400-180289000	Active TSS	Colon Smooth Muscle	Colon
47	chr5:180287400-180289000	Active TSS	Esophagus	oesophagus
48	chr5:180287400-180289000	Active TSS	Fetal Intestine Large	intestine
49	chr5:180287400-180289000	Active TSS	Left Ventricle	heart
50	chr5:180287400-180289000	Active TSS	Ovary	ovary

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