The 2.0 version of rSNPBase

Variant report

Variant rs2593178
Chromosome Location chr15:52206611-52206612
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52156000-52211000 Weak transcription Brain Substantia Nigra brain
2 chr15:52167200-52210800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr15:52171000-52210800 Weak transcription Right Ventricle heart
4 chr15:52172800-52208200 Weak transcription Brain Angular Gyrus brain
5 chr15:52177200-52213600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr15:52178800-52216600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr15:52179600-52259800 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr15:52179800-52218600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr15:52180400-52218200 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr15:52181200-52221000 Strong transcription Primary monocytes fromperipheralblood blood
11 chr15:52183200-52223000 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr15:52186400-52219000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr15:52187800-52212000 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr15:52191000-52222800 Weak transcription H9 Cell Line embryonic stem cell
15 chr15:52192800-52213600 Weak transcription Brain Cingulate Gyrus brain
16 chr15:52193400-52208200 Weak transcription Esophagus oesophagus
17 chr15:52193400-52209800 Weak transcription HSMMtube muscle
18 chr15:52193400-52210800 Weak transcription Brain Germinal Matrix brain
19 chr15:52193400-52227800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr15:52193400-52232800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr15:52193600-52233600 Weak transcription Fetal Brain Male brain
22 chr15:52193800-52210400 Weak transcription Brain Inferior Temporal Lobe brain
23 chr15:52193800-52216200 Weak transcription Brain Hippocampus Middle brain
24 chr15:52194200-52228200 Weak transcription H1 Cell Line embryonic stem cell
25 chr15:52194200-52231600 Weak transcription Psoas Muscle Psoas
26 chr15:52194400-52209400 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr15:52194400-52236800 Weak transcription Fetal Kidney kidney
28 chr15:52194400-52239000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr15:52194600-52210600 Weak transcription Brain Anterior Caudate brain
30 chr15:52194800-52210400 Weak transcription Fetal Brain Female brain
31 chr15:52196200-52234000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr15:52197000-52209000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr15:52197000-52234200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr15:52197000-52234800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr15:52197200-52208000 Weak transcription Spleen Spleen
36 chr15:52197600-52209000 Weak transcription Placenta Amnion Placenta Amnion
37 chr15:52197600-52210800 Weak transcription Small Intestine intestine
38 chr15:52198400-52219000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr15:52200000-52213800 Weak transcription NHLF lung
40 chr15:52200200-52210800 Weak transcription Pancreas Pancrea
41 chr15:52200200-52213000 Weak transcription Gastric stomach
42 chr15:52200400-52213600 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr15:52200400-52220800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr15:52200400-52262200 Weak transcription Stomach Mucosa stomach
45 chr15:52200600-52206800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr15:52200600-52210600 Weak transcription Aorta Aorta
47 chr15:52200600-52213600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr15:52200600-52213600 Weak transcription HUVEC blood vessel
49 chr15:52200800-52207000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr15:52200800-52209800 Weak transcription K562 blood

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Last update: Aug 31, 2015