The 2.0 version of rSNPBase

Variant report

Variant rs2554344
Chromosome Location chr15:52168402-52168403
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52141800-52176200 Weak transcription Brain Cingulate Gyrus brain
2 chr15:52145800-52176600 Weak transcription Psoas Muscle Psoas
3 chr15:52148200-52176200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr15:52149400-52171000 Weak transcription Brain Angular Gyrus brain
5 chr15:52152400-52170000 Weak transcription Pancreas Pancrea
6 chr15:52152400-52170800 Weak transcription Rectal Smooth Muscle rectum
7 chr15:52153800-52178000 Weak transcription Brain Germinal Matrix brain
8 chr15:52154400-52170200 Weak transcription Fetal Brain Male brain
9 chr15:52155000-52169800 Strong transcription Primary monocytes fromperipheralblood blood
10 chr15:52155000-52170800 Strong transcription Primary hematopoietic stem cells short term culture blood
11 chr15:52155000-52173600 Strong transcription Monocytes-CD14+_RO01746 blood
12 chr15:52155200-52169600 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr15:52155200-52170600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
14 chr15:52155600-52192000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr15:52156000-52211000 Weak transcription Brain Substantia Nigra brain
16 chr15:52156400-52170600 Weak transcription Brain Anterior Caudate brain
17 chr15:52156800-52170000 Weak transcription Spleen Spleen
18 chr15:52157000-52168600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr15:52157000-52170200 Weak transcription Gastric stomach
20 chr15:52157000-52170400 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr15:52157000-52170800 Weak transcription Fetal Kidney kidney
22 chr15:52157800-52178000 Weak transcription H1 Cell Line embryonic stem cell
23 chr15:52158000-52170800 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr15:52159000-52168600 Strong transcription Primary T helper cells fromperipheralblood blood
25 chr15:52159600-52171000 Weak transcription Fetal Brain Female brain
26 chr15:52160000-52169400 Strong transcription Primary neutrophils fromperipheralblood blood
27 chr15:52161200-52168800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr15:52161400-52169200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
29 chr15:52161600-52176000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr15:52163000-52186800 Weak transcription Stomach Smooth Muscle stomach
31 chr15:52163200-52170000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr15:52163200-52184200 Weak transcription Fetal Muscle Trunk muscle
33 chr15:52163400-52170600 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr15:52163400-52181400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr15:52163400-52186200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr15:52163600-52170600 Weak transcription Colon Smooth Muscle Colon
37 chr15:52165000-52169800 Weak transcription Fetal Stomach stomach
38 chr15:52165200-52181800 Weak transcription Esophagus oesophagus
39 chr15:52165400-52169000 Weak transcription Thymus Thymus
40 chr15:52165400-52170200 Weak transcription Left Ventricle heart
41 chr15:52165400-52170200 Weak transcription Lung lung
42 chr15:52165400-52175800 Weak transcription Fetal Muscle Leg muscle
43 chr15:52165600-52170800 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr15:52165800-52169200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr15:52165800-52170000 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr15:52165800-52183600 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr15:52166600-52168600 Strong transcription Primary hematopoietic stem cells blood
48 chr15:52166800-52168600 Enhancers Placenta Amnion Placenta Amnion
49 chr15:52166800-52169200 Enhancers Stomach Mucosa stomach
50 chr15:52167000-52168800 Strong transcription Fetal Thymus thymus

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Last update: Aug 31, 2015