Variant report

Variant	rs2594123
Chromosome Location	chr3:60854459-60854460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17064044	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs17630913	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs17630955	0.85[CEU][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2594119	0.85[CEU][hapmap]
rs2594130	0.83[EUR][1000 genomes]
rs2594135	1.00[CHB][hapmap]
rs56259187	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6788545	1.00[CHB][hapmap]
rs717292	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs73092711	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73092730	0.83[EUR][1000 genomes]
rs73097874	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73111756	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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