Variant report
| Variant | rs17630913 |
|---|---|
| Chromosome Location | chr3:60813617-60813618 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17064044 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17630955 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17632419 | 1.00[YRI][hapmap] |
| rs17632681 | 1.00[YRI][hapmap] |
| rs2594119 | 1.00[CEU][hapmap] |
| rs2594123 | 0.85[CEU][hapmap] |
| rs2594130 | 0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55827351 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55932127 | 0.96[EUR][1000 genomes] |
| rs6782282 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6807024 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs717292 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73092711 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73092730 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73109690 | 0.98[EUR][1000 genomes] |
| rs73109694 | 1.00[EUR][1000 genomes] |
| rs73109699 | 1.00[EUR][1000 genomes] |
| rs73111706 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73111725 | 0.98[EUR][1000 genomes] |
| rs73111728 | 0.98[EUR][1000 genomes] |
| rs73111744 | 0.96[EUR][1000 genomes] |
| rs73111751 | 0.96[EUR][1000 genomes] |
| rs73111752 | 0.96[EUR][1000 genomes] |
| rs73111756 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7626938 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529602 | chr3:60088353-60830769 | Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv998815 | chr3:60495872-60830769 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534038 | chr3:60781917-60993082 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757872 | chr3:60781943-61019003 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2759152 | chr3:60781943-61220809 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:60811000-60815200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr3:60811400-60821200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr3:60812600-60813800 | Enhancers | Fetal Heart | heart |
