Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17064044	0.98[EUR][1000 genomes]
rs17630913	0.98[EUR][1000 genomes]
rs17630955	0.98[EUR][1000 genomes]
rs2594130	0.89[EUR][1000 genomes]
rs55827351	0.98[EUR][1000 genomes]
rs55932127	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6782282	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6807024	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs717292	0.98[EUR][1000 genomes]
rs73092711	0.91[EUR][1000 genomes]
rs73092730	0.89[EUR][1000 genomes]
rs73109690	0.96[EUR][1000 genomes]
rs73109694	0.98[EUR][1000 genomes]
rs73109699	0.98[EUR][1000 genomes]
rs73111706	0.98[EUR][1000 genomes]
rs73111725	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73111744	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73111751	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73111752	0.98[EUR][1000 genomes]
rs73111756	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7626938	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60811400-60821200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60817600-60818800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:60817600-60819000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:60817600-60819000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:60818000-60819000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:60818200-60818800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:60818200-60819200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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