Variant report

Variant	rs73092711
Chromosome Location	chr3:60836470-60836471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17064044	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17630913	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17630955	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2594130	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55827351	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55932127	0.93[EUR][1000 genomes]
rs56259187	0.83[EUR][1000 genomes]
rs6782282	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6807024	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs717292	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73092730	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73097874	0.83[EUR][1000 genomes]
rs73109690	0.91[EUR][1000 genomes]
rs73109694	0.89[EUR][1000 genomes]
rs73109699	0.89[EUR][1000 genomes]
rs73111706	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73111725	0.91[EUR][1000 genomes]
rs73111728	0.91[EUR][1000 genomes]
rs73111744	0.93[EUR][1000 genomes]
rs73111751	0.93[EUR][1000 genomes]
rs73111752	0.93[EUR][1000 genomes]
rs73111756	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7626938	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60833800-60839800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:60836400-60836600	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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