Variant report

Variant	rs2602642
Chromosome Location	chr2:125562545-125562546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12711693	0.86[JPT][hapmap]
rs1384528	0.82[EUR][1000 genomes]
rs2444589	0.81[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2602643	0.96[CEU][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs314706	0.85[EUR][1000 genomes]
rs314710	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs314713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs314715	0.84[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap]
rs314718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314720	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125561400-125562600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr2:125561400-125562800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:125561600-125562600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:125561600-125562600	Enhancers	Liver	Liver
5	chr2:125561800-125562800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr2:125561800-125563000	Enhancers	Small Intestine	intestine
7	chr2:125562000-125563000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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