Variant report

Variant	rs314715
Chromosome Location	chr2:125565892-125565893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12474831	0.96[YRI][hapmap]
rs12619535	0.80[CHD][hapmap]
rs1384528	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011975	0.84[CHD][hapmap]
rs2444589	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602642	0.84[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602643	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs314710	1.00[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs314713	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs314718	0.84[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap]
rs314719	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs314720	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs314723	0.84[CHD][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs922863	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs314715	WDR33	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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