Variant report

Variant	rs2444589
Chromosome Location	chr2:125568357-125568358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12711693	0.80[CHB][hapmap]
rs1384528	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1840207	0.81[CHB][hapmap]
rs1966870	0.81[CHB][hapmap]
rs2602642	0.81[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2602643	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2602649	0.82[CHB][hapmap]
rs2685170	0.82[CHB][hapmap]
rs314710	0.96[CEU][hapmap]
rs314713	0.81[EUR][1000 genomes]
rs314715	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs314718	0.84[CEU][hapmap]
rs314719	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs314720	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125566200-125568600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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