Variant report

Variant	rs1966870
Chromosome Location	chr2:125654526-125654527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165689	0.86[EUR][1000 genomes]
rs10189275	0.85[EUR][1000 genomes]
rs11891962	0.87[EUR][1000 genomes]
rs11894518	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs11898056	0.87[EUR][1000 genomes]
rs12711693	0.81[CHB][hapmap]
rs1340187	0.87[EUR][1000 genomes]
rs1361439	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17637918	0.87[EUR][1000 genomes]
rs17637939	0.86[EUR][1000 genomes]
rs1840202	0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1840205	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap]
rs1840206	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068359	0.87[EUR][1000 genomes]
rs2226028	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap]
rs2249026	0.92[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs2444589	0.81[CHB][hapmap]
rs2602644	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602645	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602646	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2602647	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs2602649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2602655	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791629	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2791631	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2791636	1.00[CHD][hapmap];0.93[JPT][hapmap]
rs314700	0.81[CHB][hapmap]
rs58560012	0.86[EUR][1000 genomes]
rs62173301	0.81[ASN][1000 genomes]
rs6541974	0.83[EUR][1000 genomes]
rs6716082	0.86[EUR][1000 genomes]
rs6721641	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3458260	chr2:125651642-125659182	Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3458258	chr2:125651653-125659145	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3458259	chr2:125651697-125659110	Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3458261	chr2:125651697-125659110	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv979363	chr2:125651759-125658722	Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv441780	chr2:125651932-125658358	Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv1796915	chr2:125651932-125658362	Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv2421661	chr2:125651932-125658362	Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv2760625	chr2:125651932-125658362	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv514089	chr2:125652474-125658162	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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