Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11891962	0.80[EUR][1000 genomes]
rs11898056	0.80[EUR][1000 genomes]
rs1340187	0.80[EUR][1000 genomes]
rs1361439	0.81[EUR][1000 genomes]
rs17637918	0.80[EUR][1000 genomes]
rs1840205	0.85[CEU][hapmap]
rs1840206	0.92[EUR][1000 genomes]
rs1840207	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs1966870	0.89[CEU][hapmap]
rs2068359	0.80[EUR][1000 genomes]
rs2226028	0.85[CEU][hapmap]
rs2249026	0.96[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2602644	0.82[EUR][1000 genomes]
rs2602645	0.82[EUR][1000 genomes]
rs2602646	0.82[EUR][1000 genomes]
rs2602647	0.88[CEU][hapmap]
rs2602649	0.89[CEU][hapmap]
rs2602652	0.81[JPT][hapmap]
rs2602655	0.85[EUR][1000 genomes]
rs2685170	0.89[CEU][hapmap]
rs2791629	0.83[EUR][1000 genomes]
rs2791631	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6721641	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3437146	chr2:125639182-125643780	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv13274	chr2:125639339-125645009	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3337293	chr2:125639438-125645005	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125636000-125641600	Weak transcription	Fetal Lung	lung
2	chr2:125639200-125641600	Weak transcription	Fetal Heart	heart

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