Variant report

Variant	rs2602645
Chromosome Location	chr2:125684028-125684029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165689	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10189275	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11891962	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11894518	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs11898056	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12711693	0.82[CHB][hapmap]
rs1340187	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361439	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17637939	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1840202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1840205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840206	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1840207	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1966870	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs2068359	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2226028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2249026	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2602644	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2602647	0.96[CEU][hapmap];0.92[JPT][hapmap]
rs2602649	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[YRI][hapmap]
rs2602655	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2685170	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2791629	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2791631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791636	0.86[JPT][hapmap]
rs314700	0.81[CHB][hapmap]
rs58560012	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62173301	0.98[ASN][1000 genomes]
rs6541974	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6716082	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6721641	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs730668	0.81[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125683600-125684200	Enhancers	HUES48 Cell Line	embryonic stem cell

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