Variant report

Variant	rs1340187
Chromosome Location	chr2:125734740-125734741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165689	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189275	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891962	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894518	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11898056	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711693	0.82[CHB][hapmap]
rs1361439	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637939	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1840205	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840206	0.88[EUR][1000 genomes]
rs1840207	0.93[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs1966870	0.93[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2068359	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2249026	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2602644	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602645	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602646	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602647	0.92[CEU][hapmap];0.93[JPT][hapmap]
rs2602649	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2602655	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685170	0.93[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2791629	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2791636	0.86[JPT][hapmap]
rs314700	0.81[CHB][hapmap]
rs58560012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62173301	0.93[ASN][1000 genomes]
rs6541974	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6716082	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730668	0.81[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125733200-125735600	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:125733400-125739200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:125733600-125735800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:125733600-125735800	Weak transcription	Brain Substantia Nigra	brain
5	chr2:125733600-125736000	Weak transcription	Brain Anterior Caudate	brain
6	chr2:125733600-125738800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:125734600-125735200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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