Variant report

Variant	rs17637939
Chromosome Location	chr2:125735879-125735880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:125735230..125736960-chr2:125740457..125742933,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165689	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189275	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891962	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894518	0.85[JPT][hapmap]
rs11898056	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711693	0.81[CHB][hapmap]
rs1340187	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361439	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1840205	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs1840206	0.87[EUR][1000 genomes]
rs1840207	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1966870	0.92[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs2068359	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226028	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs2249026	0.83[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2602644	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602645	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602646	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602647	0.92[CEU][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs2602649	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs2602655	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685170	0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap]
rs2791629	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2791636	0.90[CHD][hapmap];0.85[JPT][hapmap]
rs314700	0.81[CHB][hapmap]
rs58560012	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62173301	0.93[ASN][1000 genomes]
rs6541974	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6716082	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721641	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730668	0.81[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125733400-125739200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:125733600-125736000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:125733600-125738800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:125735200-125736800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:125735600-125736400	Enhancers	Brain Hippocampus Middle	brain
6	chr2:125735800-125736200	Enhancers	Brain Substantia Nigra	brain

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