Variant report

Variant	rs58560012
Chromosome Location	chr2:125727054-125727055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10165689	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189275	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891962	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898056	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340187	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361439	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637939	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840202	0.93[ASN][1000 genomes]
rs1840206	0.87[EUR][1000 genomes]
rs1840207	0.87[EUR][1000 genomes]
rs2068359	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249026	0.83[EUR][1000 genomes]
rs2602644	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602645	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602646	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602655	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791629	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791631	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62173301	0.93[ASN][1000 genomes]
rs6541974	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6716082	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721641	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125725800-125727600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:125726200-125727400	Enhancers	Brain Hippocampus Middle	brain
3	chr2:125726200-125727600	Enhancers	Brain Substantia Nigra	brain
4	chr2:125726400-125729400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:125726600-125727400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:125726600-125727600	Enhancers	Brain Cingulate Gyrus	brain
7	chr2:125726600-125728200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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