Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10165689	0.83[EUR][1000 genomes]
rs10189275	0.82[EUR][1000 genomes]
rs11891962	0.84[EUR][1000 genomes]
rs11894518	0.96[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11898056	0.84[EUR][1000 genomes]
rs1340187	0.84[EUR][1000 genomes]
rs1361439	0.85[EUR][1000 genomes]
rs17637918	0.83[EUR][1000 genomes]
rs17637939	0.83[EUR][1000 genomes]
rs1840205	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs1840206	0.96[EUR][1000 genomes]
rs1840207	0.92[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs1966870	0.92[CEU][hapmap];0.93[TSI][hapmap]
rs2068359	0.84[EUR][1000 genomes]
rs2226028	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs2602644	0.86[EUR][1000 genomes]
rs2602645	0.86[EUR][1000 genomes]
rs2602646	0.86[EUR][1000 genomes]
rs2602647	0.92[CEU][hapmap];0.93[TSI][hapmap]
rs2602649	0.92[CEU][hapmap]
rs2602655	0.89[EUR][1000 genomes]
rs2685170	0.92[CEU][hapmap]
rs2791629	0.87[EUR][1000 genomes]
rs2791631	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs58560012	0.83[EUR][1000 genomes]
rs62173289	0.94[ASN][1000 genomes]
rs62173290	0.94[ASN][1000 genomes]
rs62173291	0.94[ASN][1000 genomes]
rs62173294	0.98[ASN][1000 genomes]
rs62173295	0.98[ASN][1000 genomes]
rs62173296	0.95[ASN][1000 genomes]
rs6716082	0.83[EUR][1000 genomes]
rs6721641	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3437146	chr2:125639182-125643780	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv13274	chr2:125639339-125645009	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3337293	chr2:125639438-125645005	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2249026	WDR33	cis	parietal	SCAN
rs2249026	AMMECR1L	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125642400-125643600	Weak transcription	Fetal Lung	lung

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