Variant report

Variant	rs10189275
Chromosome Location	chr2:125729106-125729107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165689	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891962	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340187	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361439	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637939	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840202	0.93[ASN][1000 genomes]
rs1840205	0.88[CEU][hapmap]
rs1840206	0.86[EUR][1000 genomes]
rs1840207	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1966870	0.85[CEU][hapmap]
rs2068359	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226028	0.88[CEU][hapmap]
rs2249026	0.82[EUR][1000 genomes]
rs2602644	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602645	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602646	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602647	0.84[CEU][hapmap]
rs2602649	0.85[CEU][hapmap]
rs2602655	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685170	0.85[CEU][hapmap]
rs2791629	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791631	0.89[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58560012	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62173301	0.93[ASN][1000 genomes]
rs6541974	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6716082	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3429891	chr2:125727632-125729830	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3356161	chr2:125728082-125729380	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125726400-125729400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:125728000-125732800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:125728200-125732600	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:125728200-125732600	Weak transcription	Brain Substantia Nigra	brain
5	chr2:125728400-125732600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:125729000-125732800	Weak transcription	Brain Inferior Temporal Lobe	brain

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