Variant report
| Variant | rs1840206 |
|---|---|
| Chromosome Location | chr2:125655295-125655296 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10165689 | 0.87[EUR][1000 genomes] |
| rs10189275 | 0.86[EUR][1000 genomes] |
| rs11891962 | 0.88[EUR][1000 genomes] |
| rs11894518 | 0.92[EUR][1000 genomes] |
| rs11898056 | 0.88[EUR][1000 genomes] |
| rs1340187 | 0.88[EUR][1000 genomes] |
| rs1361439 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17637918 | 0.87[EUR][1000 genomes] |
| rs17637939 | 0.87[EUR][1000 genomes] |
| rs1840202 | 0.81[ASN][1000 genomes] |
| rs1840207 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2068359 | 0.88[EUR][1000 genomes] |
| rs2249026 | 0.96[EUR][1000 genomes] |
| rs2602644 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2602645 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2602646 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2602655 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2791629 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2791631 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58560012 | 0.87[EUR][1000 genomes] |
| rs62173301 | 0.81[ASN][1000 genomes] |
| rs6541974 | 0.83[EUR][1000 genomes] |
| rs6716082 | 0.87[EUR][1000 genomes] |
| rs6721641 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834360 | chr2:125492685-125683200 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3458260 | chr2:125651642-125659182 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3458258 | chr2:125651653-125659145 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3458259 | chr2:125651697-125659110 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3458261 | chr2:125651697-125659110 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv979363 | chr2:125651759-125658722 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 8 | nsv441780 | chr2:125651932-125658358 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 9 | esv1796915 | chr2:125651932-125658362 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 10 | esv2421661 | chr2:125651932-125658362 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 11 | esv2760625 | chr2:125651932-125658362 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| 12 | nsv514089 | chr2:125652474-125658162 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125655000-125655400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
