Variant report

Variant	rs6716082
Chromosome Location	chr2:125733081-125733082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165689	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189275	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891962	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894518	0.82[CEU][hapmap]
rs11898056	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711693	0.82[CHB][hapmap]
rs1340187	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361439	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17637918	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637939	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1840205	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840206	0.87[EUR][1000 genomes]
rs1840207	0.93[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs1966870	0.93[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs2068359	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2249026	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2602644	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602645	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2602646	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602647	0.92[CEU][hapmap];0.93[JPT][hapmap]
rs2602649	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2602655	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2685170	0.93[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2791629	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791631	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2791636	0.93[JPT][hapmap]
rs314700	0.81[CHB][hapmap]
rs58560012	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62173301	0.93[ASN][1000 genomes]
rs6541974	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6721641	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730668	0.81[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125732600-125733200	Enhancers	Brain Hippocampus Middle	brain
2	chr2:125732600-125733400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:125732600-125733400	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:125732600-125733600	Enhancers	Brain Substantia Nigra	brain
5	chr2:125732600-125733800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:125732800-125733400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:125732800-125733600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr2:125732800-125733600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:125732800-125733600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:125732800-125733600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:125732800-125733600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:125732800-125733600	Enhancers	Brain Anterior Caudate	brain
13	chr2:125732800-125733600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:125733000-125734000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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