Variant report
| Variant | rs1840202 |
|---|---|
| Chromosome Location | chr2:125686803-125686804 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:125684432..125687307-chr20:58712378..58715076,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000228340 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10165689 | 0.93[ASN][1000 genomes] |
| rs10189275 | 0.93[ASN][1000 genomes] |
| rs11891962 | 0.93[ASN][1000 genomes] |
| rs11898056 | 0.93[ASN][1000 genomes] |
| rs12711693 | 0.82[CHB][hapmap] |
| rs1340187 | 0.93[ASN][1000 genomes] |
| rs1361439 | 0.95[ASN][1000 genomes] |
| rs17322435 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17637918 | 0.93[ASN][1000 genomes] |
| rs17637939 | 0.93[ASN][1000 genomes] |
| rs1840205 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1840206 | 0.81[ASN][1000 genomes] |
| rs1840207 | 0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1966870 | 0.81[CHB][hapmap];0.93[JPT][hapmap] |
| rs2068359 | 0.93[ASN][1000 genomes] |
| rs2226028 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2602644 | 0.98[ASN][1000 genomes] |
| rs2602645 | 0.98[ASN][1000 genomes] |
| rs2602646 | 0.96[ASN][1000 genomes] |
| rs2602647 | 0.93[JPT][hapmap] |
| rs2602649 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs2602655 | 0.92[ASN][1000 genomes] |
| rs2685170 | 0.83[CHB][hapmap];0.93[JPT][hapmap] |
| rs2791629 | 0.95[ASN][1000 genomes] |
| rs2791631 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs2791636 | 0.86[JPT][hapmap] |
| rs314700 | 0.81[CHB][hapmap] |
| rs58560012 | 0.93[ASN][1000 genomes] |
| rs62173301 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6541974 | 0.92[ASN][1000 genomes] |
| rs6716082 | 0.93[ASN][1000 genomes] |
| rs6721641 | 0.93[ASN][1000 genomes] |
| rs730668 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
