Variant report

Variant	rs12711693
Chromosome Location	chr2:125631408-125631409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12619535	1.00[YRI][hapmap]
rs1840202	0.82[CHB][hapmap]
rs1840205	0.81[CHB][hapmap]
rs1840207	0.81[CHB][hapmap]
rs1966870	0.81[CHB][hapmap]
rs2226028	0.81[CHB][hapmap]
rs2444589	0.80[CHB][hapmap]
rs2602642	0.86[JPT][hapmap]
rs2602649	0.82[CHB][hapmap]
rs2602652	1.00[YRI][hapmap]
rs2685170	0.82[CHB][hapmap]
rs2791631	0.82[CHB][hapmap]
rs314700	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs314710	0.86[JPT][hapmap]
rs314718	0.86[JPT][hapmap]
rs314719	0.86[JPT][hapmap]
rs922863	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125629200-125637000	Weak transcription	Gastric	stomach
2	chr2:125631400-125632400	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links