Variant report

Variant	rs2602783
Chromosome Location	chr2:30872655-30872656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30869127..30871765-chr2:30871926..30874749,3	K562	blood:
2	chr2:30864804..30866571-chr2:30870628..30873251,2	MCF-7	breast:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10167083	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs10175399	0.83[CEU][hapmap]
rs10183928	0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs10865520	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1096109	0.88[EUR][1000 genomes]
rs11127278	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12053428	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs12468064	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1252625	0.83[CEU][hapmap]
rs1252631	0.91[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs1252640	0.88[EUR][1000 genomes]
rs1252646	0.91[CEU][hapmap]
rs1252651	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs12999917	0.93[ASN][1000 genomes]
rs13024015	0.93[ASN][1000 genomes]
rs1447186	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447187	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470533	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470534	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470536	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525062	0.91[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs1869423	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1869424	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1869429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975555	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2121600	0.91[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2123753	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs2177698	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2266377	0.82[EUR][1000 genomes]
rs2593440	0.92[EUR][1000 genomes]
rs2593442	0.91[CEU][hapmap];0.85[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593443	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593448	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593452	0.91[EUR][1000 genomes]
rs2593455	0.89[EUR][1000 genomes]
rs2593458	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593459	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593460	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593461	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593465	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593466	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593474	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602767	0.91[CEU][hapmap];0.82[CHB][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602780	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2602782	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602785	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602786	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602789	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602790	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602791	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2602798	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602799	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602806	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2602807	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2602808	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609917	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609924	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609925	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609926	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609943	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609945	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2609950	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2609952	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609956	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609958	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862977	0.88[EUR][1000 genomes]
rs4952147	0.91[CEU][hapmap]
rs62142163	0.93[ASN][1000 genomes]
rs6731031	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6740440	0.91[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6759011	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7566983	0.88[EUR][1000 genomes]
rs7572318	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7583211	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7591110	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7592355	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs7605994	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7606200	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs829563	0.90[CEU][hapmap]
rs829564	0.91[CEU][hapmap]
rs829565	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs829575	0.91[CEU][hapmap]
rs829616	0.89[EUR][1000 genomes]
rs829617	0.89[EUR][1000 genomes]
rs829618	0.91[CEU][hapmap]
rs829622	0.91[CEU][hapmap]
rs829629	0.84[EUR][1000 genomes]
rs829630	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs829631	0.83[CEU][hapmap]
rs829632	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs829634	0.83[CEU][hapmap]
rs829635	0.89[EUR][1000 genomes]
rs829637	0.88[EUR][1000 genomes]
rs829641	0.91[CEU][hapmap]
rs829642	0.82[CEU][hapmap]
rs829646	0.82[CEU][hapmap]
rs829653	0.91[CEU][hapmap]
rs829654	0.83[CEU][hapmap]
rs829659	0.82[CEU][hapmap]
rs829660	0.87[EUR][1000 genomes]
rs829664	0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs829669	0.83[CEU][hapmap]
rs829673	0.81[CEU][hapmap]
rs829677	0.83[CEU][hapmap]
rs829679	0.83[CEU][hapmap]
rs829681	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs829682	0.89[CEU][hapmap]
rs829684	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs844194	0.83[CEU][hapmap]
rs860487	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs866680	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs895662	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895665	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv581266	chr2:30864789-30874229	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30845600-30877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:30845800-30877800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:30850200-30874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:30850400-30874600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:30860400-30878200	Weak transcription	NHLF	lung
6	chr2:30861400-30876800	Weak transcription	Fetal Heart	heart
7	chr2:30863600-30882200	Weak transcription	Ovary	ovary
8	chr2:30864000-30874800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:30864800-30875200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:30864800-30876600	Weak transcription	Osteobl	bone
11	chr2:30865000-30875200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:30865200-30873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:30865200-30877000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:30865200-30878200	Weak transcription	A549	lung
15	chr2:30869200-30878000	Weak transcription	Psoas Muscle	Psoas
16	chr2:30871400-30873600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:30871600-30873000	Enhancers	Fetal Muscle Leg	muscle
18	chr2:30872200-30873000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:30872200-30873000	Enhancers	Fetal Muscle Trunk	muscle
20	chr2:30872200-30873600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:30872200-30876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:30872400-30878200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:30872400-30878200	Weak transcription	Left Ventricle	heart
24	chr2:30872600-30872800	Weak transcription	Spleen	Spleen
25	chr2:30872600-30876400	Weak transcription	NHDF-Ad	bronchial
26	chr2:30872600-30876600	Weak transcription	Right Ventricle	heart
27	chr2:30872600-30877600	Weak transcription	HSMMtube	muscle

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